KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112234455
Entry
112234455         CDS       T05605                                 
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
  KO
K11653  AT-rich interactive domain-containing protein 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112234455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112234455
   03021 Transcription machinery [BR:otw03021]
    112234455
   03036 Chromosome and associated proteins [BR:otw03036]
    112234455
Transcription factors [BR:otw03000]
 Eukaryotic type
  Helix-turn-helix
   ARID
    112234455
Transcription machinery [BR:otw03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     112234455
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    112234455
SSDB
Motif
Pfam: BAF250_C ARID
Other DBs
NCBI-GeneID: 112234455
NCBI-ProteinID: XP_024258371
Position
LG03:complement(31311543..31332705)
AA seq 2343 aa
MAAQVASAATLNTSPPSELKKPDRDPHEDSILGEKQLENKQPGLERGSPVRGDLQDGADV
GNAGGGGEPEMKNGNGNPSRTNNNQNDSIGSEGNNHPGMVHHHGSGFPPPSYGYSQHYGR
APFHQHGGQQSPGMAAAAGPAVPSSNMMDPYQPNSHDHGFSNHQFNNYNPFPNRTPYSGQ
GYGMNPSRNTQAPAAGGQPANVKQQPAGGPTAMAASYNNQRYNMGNPQPTSTPTLNQLLT
SPSSTRIYPNYPSSEYSNQEGASKGPTDTGSSGQYGGGNPGWQQRTHHPPPMSPGSTGQP
LGRSQPPGAMDPMAKLRGQPYGGGSPYSQQPGQGPPPGAQQGHSYPGQGYGPLGSQRYPV
VMQGRTPGAMGGMQYGQQMPSYGQQGPGGYGPQGQGPYYGQQGQALHPGQQQGPYPQAPL
GQQGGQTPYPQQSHPPQTSASHAQGGPPYPQPHMPPQGPQPGPSQGPPPSQPPYSQGPAQ
AQSGQPPYPQQQGPPSQPPQQASSQVPAGSQPQLSYPPTQGPQQLPTQQQQQQPQTPSQP
PQQPPGHSQHPQGQPASYSQNPPQQQQSPYQRFPPPPQQEISQDSFSSQSSAPPSNQPKS
VSEDVSMQGQPSSLPVSPHPTCAKDLSGSIDDLPTGTDGALSPGVSTSGVSSSQGEQSNL
AQSPFSPHTSPHLPGIRGPSPSPAGSPASATTSRTGPLSPATMPGTQMPPRPSSVQSDGS
LHPAMSQSPMAQERGFVQRNPQMPPYGSPQSASPLSPRQSSGGQMHPGMGPYQQQNNSMG
GYGPQGGQYGPQGYPRQPGYNNMPNANYPGPGMGNPMNPGPGMGIPINPMSGQGGLPYAG
IPPGRMPAGQMGVRPYGPNMGPNMPPNMSNMPPQVGSGMCPPPGLNRKAQEAAAVVMQHA
ATNSIHSRMPGYPNMSPGMMGSGTPYGPPMNNMPGMMNTQGGPPFPMGPNMVNNSSGLVP
SPEFGMDGKMNQGQKMNNKVDGTPKAEPTKSKKSSSSTTTNEKITRLYELGPELERKMWV
DRYLGFIEEKAMGMTNLPAVGRKPLDLFRLYVSVKEIGGFAQVSVNKNKKWRELSTNLNV
GTSSSAASSLKKQYIQCLYAFECKIERGEDPPPEIITDNKKANQAKVQPPSPAGSGSLQG
PQTPQSTSSSMAEGSDLKPPTPASTPHPTQMPPGARSNVALQDPFADSSDPAFPRRNSMT
PNSGYQSGMSTPEMPGRMGPGPYEGPGPNKDPFGAMRKVGEQFLPASQGPNSGMAEQQQF
NRGPPPGAMGNMSMAQRQQYGPGPYGQGYERRPEQGMGPEGSMGSGAPQPNLMPVNSDTG
MYSPNRYPPQQQPRNDSYGNQYPGHGTPPGGSYPNQQPGMYPQQQQVMALTHCNYKRPVE
GGYPPAKRHEGEMYSAPFSAGLQQQQQQQPQQQPGVASAPPAGQPEMYQPQYSSGSFTGT
DRRLPGPQGQFPFPFNRERMQAATGPNAQPSMPPQIMQPSPDGPPGGVWQGRGEINYPGN
YPNRQGGPPGGPAQGPGQPGMNRGSEEMSSEQRMNHEGQWGPGQMGPRQPPYGPGGTGPP
MTRTLQSNYQSAQAMQNHIPQVSSPSPMPRGGPMESRTSPSKSPYMHSGIKMQKAGPPVP
ASHIVPQSVQSPLIRRDTPFPPGSVEATHPILKPRRCLTTKDIGTPEAWRVMMSLKSGLL
AESTWALDTINILLYDDNSISTFNLNSLPGLLELVVEYFRRCLIEIFGILREYEVGDPGQ
RTLLDPDALKRDWSCMEDEEPGVEDMKVEGEDDDEEEEVVVQRSKQPAGTTIDGQAQVKQ
EDEQESCSEWDTLKEKDAEDKEKSCSTFEQPSSSSDPPGLGPATPQERPKQASKFDKLPL
KMVRKKDPFPAGRATQRGKVQEFDSGLLHWRAGGGDSTEHIQTHFERREEFLVPRERVLV
VPTAKRKRPEPEKVGDKDNAIPTEKYKQKRERDQRPSQPSSTEKASTTTDGKEGKSEHSD
AETEEMSQSEEPQSQQEHNKSSGPTRQQVPQRVVEDEPHSKDEGPLVTLANWQDALARRC
VCVSNIVRSLSFVPGNDQEMSKHPGLMLLLGRLVLLHHRHPERKQAPLTYEKEEESDDCL
GQRDEWWWDCLSLLRENCLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPSAEAQDP
FPTLGPHSAMSPQRLVLETLSKLSIQDNNVDLVLATPPLGRLEKLYGTLVRLVGERKVAV
CREMSVVLLANLAQGDSMAARAIAVQKGSVGNLLGFLEDSLAATQLQQSQSSLLHLQGMH
FEPTSNDMMRRAARALHALAKVEENHSEFTLYESRLLDLSVSPLMNSVVSHVICDVLFLI
GQS
NT seq 7032 nt   +upstreamnt  +downstreamnt
atggccgctcaggtcgccagcgccgccactctcaacacaagcccgccttccgaactaaag
aaaccggatcgagacccacatgaggattctatactgggggaaaagcagctggaaaacaag
cagccgggattagagcgcggatctccggtccggggggatctgcaggacggggccgatgtt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaacgggaacccttccagg
actaataataatcagaatgattccattggatccgaggggaataaccatcctgggatggta
caccaccatgggtctggttttcctccaccttcttatggatacagtcaacactacggccgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcaggtcca
gccgtgccgtcgagtaatatgatggacccatatcaacccaattcgcacgaccatggcttt
tctaaccaccagtttaacaattacaatccattcccgaacagaactccctattctggccaa
ggatacggcatgaacccctcacgtaatacccaggctccggcagctgggggacagccagct
aacgttaagcagcaaccagcaggaggacccacagcaatggctgcatcttacaacaaccag
agatataatatggggaatccacagccaacgtctaccccaaccctcaaccagctcctaacc
tctccaagctccactcgtatatatccaaattacccatctagtgaatatagtaatcaggaa
ggcgctagtaagggaccaacagacacgggcagtagcggtcagtatggaggggggaatccg
ggttggcaacaaaggacccatcatccgccgcctatgagccctggaagtacagggcaaccc
ctaggtagaagccagcccccaggtgcaatggatccgatggctaagttgagaggccagccg
tacggagggggcagtccatactcccaacaacctggacaggggccacccccaggagcccag
cagggtcactcatacccgggccaaggctacggtcctcttggctcccagagatatccggtg
gtcatgcagggccgcacccctggggctatggggggcatgcagtacgggcagcagatgccg
tcttatgggcagcagggaccaggaggctatgggcctcagggccaagggccctactacggc
caacagggccaggctttacacccaggccagcagcaagggccctacccccaggcacctctg
ggacagcagggtggtcagacaccctaccctcagcagtcccaccctccccagacgtcagcc
tcacatgcccagggtgggccaccctatccgcagccccacatgcccccccagggcccgcag
ccaggtccatcccaagggcccccgccgtctcagccgccctactcccagggcccagcccag
gctcagtctggtcagcctccttacccccagcagcaggggcctcccagccagcctccacag
caggccagctcccaggtcccagcagggtcacagccccagcttagctatccacccacgcag
ggcccacagcagctccccacacagcagcagcagcagcaaccccaaacaccctctcaaccc
cctcagcaaccaccaggtcacagccagcatccacagggccagcctgcatcctactcccag
aatcctccacagcaacagcagtcaccttaccaacgcttccctcctccaccacagcaggag
atatcccaggactcgttcagttcccagtctagcgcccctccctccaaccagcccaaaagt
gtctcggaggacgtcagcatgcaaggccagccgtccagcctaccggtgagtcctcaccca
acctgtgcaaaggatctctcaggctccatcgatgacctgcccacgggcacggatggcgct
ctgagtcctggcgtgagcacttcaggtgtgtcaagcagccagggcgagcagagcaacctg
gcccagtcgcccttctcgccccacacctctccccacctgccaggcatccgagggccctca
ccgtcacctgccggctcccccgccagtgccaccacctcccgcacggggcccctctcaccc
gccacaatgccagggacccagatgccccctagaccatcgagtgtgcagtctgacgggagt
ctgcaccccgccatgagccagtctcccatggcccaggagagagggttcgtacagagaaac
ccccagatgcccccatacggttcaccacagtctgcctctcccctgtcaccccgacagtcc
tctggaggccagatgcaccctgggatgggaccttatcagcagcagaacaactccatgggg
ggctatggacctcagggtgggcagtatggcccacaaggttacccccggcaacctggatac
aacaacatgcccaatgcaaactaccctggccctggcatgggcaaccccatgaaccctggc
cctggcatgggcatacccataaaccccatgtctgggcaaggggggctgccgtacgcaggc
atcccccctggtagaatgcctgcgggccagatgggagtgcgtccctatggccctaacatg
gggcccaacatgccacccaatatgagtaacatgccacctcaggtgggctcagggatgtgc
cctccccccggcctcaaccggaaggcccaggaggctgcagctgtagtcatgcaacacgct
gctaccaactccatacacagcaggatgcctggctaccccaacatgtcccctggcatgatg
ggttctggcaccccctatggccctcccatgaacaacatgcctggcatgatgaacacgcag
ggcggcccacctttccctatggggcccaacatggtcaataactccagtggtttggtcccc
agtccagagtttggtatggatgggaaaatgaaccagggccagaagatgaacaacaaagtg
gacggaacaccgaaagcagaaccgactaaatccaagaagtcaagctcttccacgacgacc
aacgagaagatcacgcgtctgtatgagctgggccccgaactggagaggaagatgtgggtg
gaccgctacctgggctttatcgaggagaaagccatgggcatgaccaatctgcctgctgtt
ggccgcaagcccctagacctcttcagactctacgtctcggtcaaggagattggaggcttc
gcacaggtcagtgtgaacaagaacaagaagtggcgggagctgtccaccaacctgaacgtt
ggcacgtcgagcagcgctgccagctccctgaagaagcagtacatccagtgtctgtacgcc
ttcgagtgcaagatcgaacgcggggaggacccccctcctgagatcatcactgacaacaag
aaggccaaccaggccaaggtccagccaccctccccagctgggtcaggttctctccagggc
cctcagaccccccagtccaccagcagctccatggccgagggcagcgacctcaagcccccc
acacccgcctccaccccacaccccacccagatgccacccggggccaggagcaatgtggcg
ctgcaggacccatttgctgacagtagtgaccctgctttccccagaaggaactccatgacc
cctaactctggctaccagtctggcatgagcaccccagagatgccaggtcgcatgggtcca
gggccctacgagggtccagggcctaacaaagacccctttggtgccatgcggaaagttggg
gagcagttcttgcctgccagtcagggtcctaacagtgggatggctgaacagcaacagttt
aaccgtgggcctcctccaggtgctatggggaacatgtcgatggctcagagacaacagtac
ggaccaggaccttacggacaaggctacgaaaggaggccagagcaggggatgggcccagag
ggcagcatgggatctggtgctccgcagccaaacctgatgcctgtcaactccgacacgggg
atgtactcgccaaaccgctacccaccacagcagcagccacggaatgattcctatggtaat
caatatcctggccatggtactccccctggtggttcctatcccaatcaacagccaggaatg
tacccacagcaacaacaggtgatggctctaacccactgtaactacaagcgtcccgtggaa
gggggctacccaccagcgaagcgtcacgagggggagatgtacagtgcccccttcagtgca
gggctgcagcagcagcagcaacaacaaccgcagcagcagccaggggtggcttctgcaccc
cctgctggccagccagagatgtaccaaccccagtacagcagcggctccttcaccggcact
gaccgccgcctgcctggtccccagggccagttccccttccccttcaacagagagcgcatg
caggccgccacggggcccaacgcccagccctccatgccccctcagattatgcagccaagc
cctgacggacccccaggtggcgtgtggcagggccgcggggagattaactatcccggcaac
taccccaaccggcagggtggccccccagggggcccagcccagggacctggccaacccggc
atgaaccgcggttcggaggaaatgtcatcagagcagcgcatgaaccacgagggccaatgg
gggccaggtcagatgggccctcggcagcccccctacggccctggagggacgggcccgccc
atgacccgcaccctacagtccaactaccaatccgctcaggccatgcagaaccacattcca
caggtgtccagtccctcccccatgccccgcgggggccccatggagagccggacgtcgccc
agtaaatctccctacatgcacagtggcatcaagatgcaaaaggcagggcccccggttcct
gcctctcacatagtgccccagtctgtgcagtcccctctgatccgtagagacacgcccttt
cccccaggctcagtggaggccacccaccccatcctaaaaccacgccgatgcctcacaacg
aaagatatcgggaccccagaggcttggagggtgatgatgtccctaaagtctggcctgttg
gctgagagcacgtgggccctcgacaccatcaacatcctcctgtatgacgacaacagcatc
tccaccttcaacctcaattcgctgcctggcctgctggagctggtggtggagtacttccgg
cgctgcctcatcgagatctttgggatcttgcgcgagtacgaggtgggcgatcccggccag
aggactctactggaccctgacgccctgaaaagagactggagctgcatggaagatgaggaa
ccaggggtggaggacatgaaggtagaaggagaggatgatgatgaggaggaagaagtggtg
gtgcagcgttcaaaacagccggccgggacgacaattgatggacaggctcaggtgaagcaa
gaggatgagcaagagtcgtgctcagaatgggacactctgaaagagaaggatgctgaagat
aaggagaagagctgctctacctttgagcagcccagctcttcatcggacccacctggcctg
ggcccggctaccccccaggagagacccaaacaggctagcaagttcgacaagctccccctg
aagatggtacggaagaaggacccgtttccagcaggcagggcaacccagagaggaaaagtg
caggagtttgacagtgggctgctccactggcgtgccggcggcggagacagcacggaacac
atccagacccactttgagaggagggaggaattcctggtcccacgagaacgagtgctggtc
gtccccacagccaagaggaaaaggccagaaccagagaaggtgggggacaaggacaatgct
atccccacagagaaatacaaacagaagagggagagggatcagaggccctcccagccatca
tccacagagaaggcctcaacaacaaccgacggtaaggaggggaagtccgagcactcggac
gctgagacagaggaaatgtcacagtccgaagagccccagagccagcaggagcacaacaaa
tcgagcggacccactcgtcagcaagtcccccagcgtgtggtggaggacgagcctcacagc
aaggacgagggcccactggttacactggccaactggcaggatgctctggcccgccgctgt
gtctgcgtctccaacatcgtgcgcagcctctccttcgtgcctggcaacgaccaggagatg
tccaaacaccctggcctcatgctgctgctgggtcgcctagtgctgctgcaccaccgccac
cctgagaggaaacaggccccgctcacctacgagaaggaggaggagtctgatgactgtctt
ggccagagggacgaatggtggtgggactgcctgtcgctgttgagggagaactgcctggtc
actctggccaacatctctggccagctggacctctccatctaccccgagagcatctgcctt
cctctgctggacggcctcctccactgggctgtgtgcccctcggctgaggcccaggacccc
ttccccacgttggggccacacagcgcaatgtccccccagagactggtcttggagaccctc
agcaagctgagcatccaagacaacaatgtggacctggtcctggccacgccgccgttgggt
cgtttagagaagctgtatgggaccttggtgcggctggttggggagagaaaggtggccgtc
tgcagggagatgtcggtggtgttgctggccaacctggcccagggagacagcatggcagcg
cgcgccattgccgtgcagaagggaagcgtgggaaacctcctgggcttcttggaggacagc
ctggcggccacccagctacagcagagccagagctctctgctgcatctgcaggggatgcac
tttgagcccaccagtaatgacatgatgcggcgggcggcccgggccctgcacgccttggcc
aaggtggaggagaaccactcagagttcacactctacgagtcacgcctcctcgacctctcc
gtgtcacctctcatgaactctgtggtgtctcacgtcatctgcgatgtactctttctgatt
ggccagtcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

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