KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112239110
Entry
112239110         CDS       T05605                                 
Symbol
yars1
Name
(RefSeq) tyrosine--tRNA ligase, cytoplasmic isoform X1
  KO
K01866  tyrosyl-tRNA synthetase [EC:6.1.1.1]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    112239110 (yars1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:otw01007]
    112239110 (yars1)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:otw03016]
    112239110 (yars1)
   03029 Mitochondrial biogenesis [BR:otw03029]
    112239110 (yars1)
Enzymes [BR:otw01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.1  tyrosine---tRNA ligase
     112239110 (yars1)
Amino acid related enzymes [BR:otw01007]
 Aminoacyl-tRNA synthetase
  Class I (A)
   112239110 (yars1)
Transfer RNA biogenesis [BR:otw03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    112239110 (yars1)
 Prokaryotic type
    112239110 (yars1)
Mitochondrial biogenesis [BR:otw03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    112239110 (yars1)
SSDB
Motif
Pfam: tRNA-synt_1b tRNA_bind
Other DBs
NCBI-GeneID: 112239110
NCBI-ProteinID: XP_042151014
Position
LG13:complement(5548023..5560710)
AA seq 528 aa
MGEQLSPDEKLHLITRNLQEVLGEEKIKQVLSERELKVYWGTATTGKPHVAYFVPMSKIA
DFLKAGCEVTILFADLHAFLDNMKAPWELLELRVQYYEQVIKAMLESIGVPLDKLKFIKG
TDFQLSREYTLDVYRLSSMVTEHDAKKAGAEVVKQVDHPLLSGLLYPGLQALDEEYLKVD
AQFGGVDQRKIFTLAEKYLPSLGYAKRSHLMNPMVPGLTGAKMSSSEEESKIDLLDRKED
VKKKLKKAFCEPGNIENNGVLSFVKHVLFPLVGEFSIKRDPKFGGDKTYTDFEEVEKEFG
EELIHPGDLKAGVEVALNKLLDPIRKKFESPELRKLSSTAYPDPSKNKGAGKGNPKVAEE
DELVPSRLDIRVGKVISVEKHPDADSLYLEKIDVGEAEPRTVVSGLVAYVSQEALQDRLV
LLLCNLKPQKMRGVESQAMLLCASIEGDPRRVEPLDPPEGSSPGERVFVEGYETGKPDDK
LNPKKKLWEKLQVDLKVSGQCVAQWQDKHLMTKLGHITCKTLKGGNIS
NT seq 1587 nt   +upstreamnt  +downstreamnt
atgggagaacagctgagcccagatgagaagcttcacctcatcactaggaaccttcaggag
gtgcttggagaagagaagataaagcaggtcctgtcagagagggaactgaaggtgtactgg
ggaactgccaccacaggaaaaccccatgttgcctacttcgtccccatgtccaagattgcg
gacttcctcaaggcagggtgtgaggtgaccatcctgtttgcagacctgcacgcgttcctg
gacaacatgaaggctccctgggagctgctggagctgagggtccagtactacgagcaggtg
atcaaggccatgttggagagtatcggggtgccgttggacaaactcaagttcatcaaaggg
acagacttccaactcagcagagagtacactctggacgtgtatcgtctgtcgtccatggta
acggaacatgatgctaagaaggctggagccgaggtggttaaacaggtggaccaccctcta
ctcagtggtctgctctacccgggactacaggctctggatgaggagtatctgaaagttgat
gcccagtttgggggagtcgatcagaggaagatcttcaccctggctgagaagtacctgccc
tctctgggctatgctaagcggtcccatctgatgaaccccatggtaccaggactgactgga
gctaagatgagttcttcagaggaggagtctaagattgacctcctggacaggaaggaagat
gtgaagaagaagctgaagaaggctttctgtgagccgggcaacattgagaacaacggagtc
ctctcatttgttaaacatgtcctcttcccactcgtaggagagttctccatcaaaagagac
cccaagttcggaggagacaaaacctacacagactttgaggaagtggagaaagaatttggc
gaagagctgatccatccaggtgacctgaaggcgggcgtggaggtggcccttaacaagctg
ctcgacccaatcaggaagaagtttgagtctccagagcttcgtaaactctccagcacggcc
tatccagacccgtcaaagaacaagggagcagggaaggggaaccctaaagtagcagaagag
gatgagctggttccctccagactggacatcagggtgggcaaggtcatcagtgtggagaag
catccagatgctgattcgctgtacctggagaagatagacgtcggagaggcggagccaagg
acggtggtgagcggcctggtggcctacgtttcccaggaggccttgcaggacaggctggtg
ttgttgctatgcaacctgaagccccagaagatgaggggggtagagtcccaagccatgctg
ctctgtgcctccattgagggggatcccagaagagtggagcctcttgacccccctgagggg
tcgtcacccggggaacgggtgttcgttgaggggtacgagacgggcaagccagacgacaaa
ctaaacccaaagaaaaagctgtgggagaaactacaggtggacctgaaggtgtcaggacag
tgtgtagcccagtggcaggacaaacacctgatgaccaaactgggacacatcacctgtaaa
acactgaagggaggcaacatcagctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

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