KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112245857
Entry
112245857         CDS       T05605                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    112245857
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:otw03021]
    112245857
   03036 Chromosome and associated proteins [BR:otw03036]
    112245857
Transcription machinery [BR:otw03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     112245857
   Coactivators
    SAGA/TFTC/STAGA complex
     112245857
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     112245857
    STAGA complex
     112245857
    TFTC complex
     112245857
    SAGA complex
     112245857
    SLIK complex
     112245857
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 RMC1_N WD40_like Nup160 PROPPIN Nbas_N
Other DBs
NCBI-GeneID: 112245857
NCBI-ProteinID: XP_024269797
Position
LG32:10768515..10772082
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQAESGCANIVSAA
PCQADPQQYETQFSRLCNFLSEAALPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDTEQRSTVEQLRHVLTQQDVNANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGTTGAGAAGAATMAPNSTSSWSGVDGPERGE
AAGVEVPTGIPQSEVALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFSSG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADSSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggatactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcaggcagagtcggggtgtgcaaacattgtctctgctgcc
ccttgtcaagctgaccctcaacagtacgagacccaattttccagactatgcaattttctc
tcagaagcggcgttgccatggggccaggaggtgagctgcgtcctgtacccgctcttcgtt
tatctccacctggacatggtgcgctgcagcttgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacaccgagcagcgctccaccgtggagcagcttcgc
cacgtcctcacccagcaggatgtcaacgccaaccctaagctcctggccttcctcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctatctgcagagt
gaagacaacagtaccctctgtagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtacgggacgacgggagcaggagccgccggggctgcc
accatggcccccaactctacctcctcgtggtcgggagtggatggccctgagcgaggggag
gcggcgggggtggaagtccccacagggatcccgcagagcgaggtggccctggaggcactg
caggactgcattaagaaagtgcgtgaggggccgccatcactcaccaccgtgtgcttctac
gccttccagcacacggagcagctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagttcggccgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgacgtgtcacacatccgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacggctttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctaggcagcttcaccaacacggccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctacttttccagcggc
tcccacgaccgcactgcccgcctctggaccttctccaggacataccccctgaggctctac
gccggccacctagcagacgtggactgtgtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagctttcgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccagcgggtgaagctgtgggacctggcctcaggcgctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggaccacccacgcggatagctcgtccagcgagctggtggggctctacacgggaaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaacg
gcgcaagaaaaacatggacagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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