KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112248349
Entry
112248349         CDS       T05605                                 
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112248349
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112248349
   03041 Spliceosome [BR:otw03041]
    112248349
   03032 DNA replication proteins [BR:otw03032]
    112248349
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     112248349
Spliceosome [BR:otw03041]
 Complex A
  U1 snRNP components
   Sm proteins
    112248349
  U2 snRNP components
    112248349
 Complex B
  U1 snRNP components
    112248349
  U4/U6.U5 tri-snRNP components
    112248349
 Complex C
  U2 snRNP components
    112248349
DNA replication proteins [BR:otw03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     112248349
SSDB
Motif
Pfam: LSM Kringle
Other DBs
NCBI-GeneID: 112248349
NCBI-ProteinID: XP_024273061
Position
LG04:complement(23128091..23129540)
AA seq 127 aa
MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQ
VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGAGAGRGKAAILKAQVAARGRGRGGMGRG
NIFPKRR
NT seq 384 nt   +upstreamnt  +downstreamnt
atgtccattggagtgccaatcaaagtccttcatgaagctgagggccacatcgttacctgc
gagaccaacaccggggaggtgtaccgggggaaactcattgaagctgaggacaacatgaac
tgccagatggccaacatcacagtgactcacagagacggccgtgtagcccagctggagcaa
gtgtacatccgaggcagcaagattcgattccttattctaccagacatgctgaagaatgca
ccaatgctaaagagtatgaagaacaagaaccagggagctggagctgggagaggcaaagct
gccattctcaaagcacaagtggctgctaggggtcgaggacgtggagggatgggaagagga
aatatattcccgaaaaggcgataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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