KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112250855
Entry
112250855         CDS       T05605                                 
Name
(RefSeq) DNA-directed RNA polymerase, mitochondrial
  KO
K10908  DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03029 Mitochondrial biogenesis [BR:otw03029]
    112250855
Enzymes [BR:otw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     112250855
Mitochondrial biogenesis [BR:otw03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Mitochondrial RNA polymerase
    112250855
SSDB
Motif
Pfam: RNA_pol RPOL_N PPR_2 PPR_3
Other DBs
NCBI-GeneID: 112250855
NCBI-ProteinID: XP_024277109
Position
LG05:complement(53419852..53514462)
AA seq 1339 aa
MSLLRLCTFPKCLSGRILLEISVRRVPYVDHCLTIRNNIERHISEPPWTSQRRHFSALIP
KKEDGKKRVWEQSQLLDVLEARIQQLQSDVIVDVQHEKVQFVKASKAGIGDSSGNSPKNV
FGERPEVPKAGQTISKGGGQTGKGEGKDASASKSRWMEKLSQEKKTKTKKLKQKLGLEDK
PVKSSKGKLMLPGTSHKTISTKAGIKTASTVKKSKSLKNQEHTMAASKHKHTMAAAPVAA
ANVPIRKAKGKGKASKEPAPELSEARNRAEEMERKAEAKARELAEVEELERKLNQWAVSA
RPELVQDNSEARVYGDVQRSVRCYLEACVFCGDIDRAHRFLLSHHRMVSRRNLLNIGLYN
IMMRVWAKKGSLNQIGRMFILIEEAGLKPNLGSYCAALECMGRNPDCSPHLINRVLRQME
EDGLPVDELFSHCVFRQDERDMVLRAIHTVQPDFQSSINTILQTCSSPLVKDFYTERADA
KYPKMAFSLEELQERFSRQLSIEQASTITIHSVEAMKPVTSHMAKMRDLLAVQRLVWHKA
LVGALREGKIILASSTQKAVRLSLYPYLCLLDEKDYVDIMIQSLSNLPPSGESLHILAKE
LGNRVHNMFCIRMKGHNQMVDKLSHIYNEYTELLAKDSKEFDVLPRERWWKLEAEHSSGP
SLLGDETHWPHMVVVELGTYLVDLMVKHMKVNSDLLNSAYDRKLIPVLYHMYTFRSNKQV
GFIKPHPILTQMQQDAMDTTLTFDSYVMPMLCPPVPWTSAKFGAYLLTPTKMMRAVEGAN
QHEILLEKCQDADLHAVLDSLNQLGNAAWRINQPLLDIIISIFNDKGSEKLDVPPPNSEA
PKIPRYNQQDSATFTSAEKAHLKREVVNAKKKCSEMHSLRMDALYKLSIANHMRDEVFWF
PHNMDFRGRTYPCPPYFNHLGSDVTRAVLVFAEGKPLGPGGLEWLKIHLVNLTGLKKRSS
LAGRLEYANSIMDDILDSADNPLIGKKWWQNADEPWQTLACCMEIANAVRSPDPTHFISH
FPVHQDGSCNGLQHYAALGRDVIGATSVNLIPCEVPQDVYSGVAQQVEEFRVRDAEKGLK
IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKEYVWDASHYLVHQV
FSSLKEMFTGTREIQDWLTESARLISKSGSTVEWVTPLGLPIIQPYHRSRTQMLKATIQY
LSFQITHDSKERPDTVKQKNAFPPNFIHSLDSTHMMLTALYCYSAGLTFVSVHDCFWTHA
ITVDTMNKVCREQFVALHSQPILQELSNFLLKKYCSGLQSEVKSKKFLEYQRMLLLLAKV
PQTGNFDLQRVKESTYFFS
NT seq 4020 nt   +upstreamnt  +downstreamnt
atgtcacttttgagactctgtacctttccaaagtgtctgagtggtcgcatactgttggaa
ataagtgttcgtcgcgtgccatatgttgaccattgccttacaatccggaataacattgaa
aggcacatttcagagccaccatggacatcacaacgaagacatttctcagctctgatccca
aagaaagaagatgggaaaaaacgagtatgggaacaatctcagctgctggatgtgctcgaa
gccaggatccagcaactccaatctgacgtcattgtagatgtccaacatgaaaaggtgcaa
tttgttaaagcttccaaggcagggataggggattcttcagggaacagtcccaagaatgtg
tttggggagaggcctgaggtgcccaaggcgggacagactattagtaagggagggggacag
actggtaaaggagagggcaaagatgcatcagcctccaaatcccgctggatggagaaactg
agccaggagaagaagactaaaacaaagaaactgaagcagaagctaggcctagaggataaa
cctgtgaaaagcagcaaaggcaaactgatgctaccaggtacctcacataaaaccatatcg
acaaaagcaggaataaagactgcatcaactgttaaaaagagtaaaagtctgaaaaaccaa
gagcacaccatggcagcttcaaagcacaagcacactatggcagctgcaccggttgctgct
gctaatgtgcctattagaaaagccaaagggaagggtaaagcctcgaaggagccggctcct
gagttgtcggaggccaggaacagggccgaggagatggagaggaaggctgaggccaaggcc
cgggagctggcagaggtggaggagctggagaggaagctgaaccagtgggctgtgtcagcc
agacctgagcttgtgcaggataacagcgaggccagggtgtacggcgacgtccagcgcagt
gtgcggtgctacctggaggcctgtgtgttctgtggggacatcgacagagctcaccgcttt
ctgctcagccaccaccgtatggtcagccgacgcaacctgctcaacataggactctacaac
atcatgatgagggtctgggccaagaagggctctttaaaccagattggccgtatgttcatt
ctgatagaagaggctggtctgaagcctaaccttggctcttactgtgctgctctggagtgt
atgggtcgaaaccctgactgttccccacatctcatcaacagggtcttgcgtcagatggag
gaggatggcctgcctgtggacgagctgttcagtcactgtgtgttcaggcaggatgagagg
gacatggtgctcagagccatccacaccgtgcaaccagacttccagtccagcatcaacact
atcctgcaaacctgctcctcaccactagtcaaagacttctacacagagagggcagatgct
aaataccccaagatggccttcagcctggaggagctgcaggagaggttcagccgtcagctg
agcatcgagcaggccagcaccatcaccattcactctgtggaggccatgaagcctgtcacc
tcacacatggccaagatgcgggaccttctggcagtgcagcggttagtgtggcacaaagcc
ctggttggggccctgagggagggcaagataatcttggccagcagcacccagaaagccgtc
agactcagcctctacccctacctctgtctgctggatgaaaaggactatgtagacatcatg
atccagagtctgtccaacctgcctcccagtggggagtctctccacatcctggccaaggag
ctaggcaaccgggttcacaacatgttctgcatccgcatgaagggacacaatcagatggtg
gacaagcttagtcatatctacaatgaatatactgagctactggccaaagactctaaggag
tttgacgtattgcctagggagcgatggtggaagctggaggcggagcatagctctggtccc
tccctgctgggggacgagacccactggcctcacatggtggtggtggagctgggtacctac
ctggtggacctcatggtcaagcacatgaaagtgaacagcgacctcctcaactctgcctac
gaccgaaagctcatccctgtgctctaccacatgtacaccttccgcagtaacaaacaggtc
ggcttcatcaagccgcaccccatcctgacgcagatgcagcaggatgccatggacaccacg
ctgacctttgactcctacgtgatgcccatgctgtgcccgcccgtgccctggacctcggct
aaattcggtgcttacctcctcacccccaccaaaatgatgcgcgcggtggaaggcgccaac
cagcatgagatcctgctggagaagtgccaggatgctgacctccatgccgtgctggactcc
ctcaaccagctgggcaatgcagcctggaggatcaaccagcccctgctggacatcatcatc
tccatcttcaatgacaagggtagcgagaagctggacgttccgccgcccaactctgaggct
cctaagattccccgctacaaccagcaggactcagccaccttcacctcagccgagaaggcc
cacctgaagagggaggtggttaatgctaagaagaagtgcagtgagatgcacagcctcagg
atggacgccctctataaactctccatcgccaaccacatgagggacgaggtcttctggttc
ccccacaacatggacttccgcgggcgcacctacccatgcccaccctacttcaaccaccta
ggcagcgatgtgaccagggctgtcctggtgtttgcggaggggaagcccttagggccgggc
gggctggaatggctgaagatccacctggtcaacctgacaggcttgaagaaacgcagctcg
ctggcaggcaggttggagtacgccaactccatcatggatgacatcctggactctgcagac
aaccccctcatcggtaagaagtggtggcagaatgcagatgaaccctggcaaaccctggcc
tgctgtatggagatagccaacgccgtcaggtcacctgaccccacacacttcatctcccac
tttcctgtacatcaggatggctcgtgtaacggcctgcagcactatgcagccctgggtcga
gacgtgattggtgccacctctgtgaacctcattccctgtgaggtgccccaggatgtctac
agcggggtggcacagcaggtggaggagttccgtgtgcgggatgctgagaagggtctgaag
atcgcccaggtgctggagggcttcatcagcaggaaggtggtgaagcagacggtgatgacg
gtggtgtacggggtgacgcgctacggaggacgcctccagatagagaagaggctcaaggag
attgatgacttccccaaggagtatgtatgggatgcctctcactacctggtccaccaggtg
ttcagcagtctgaaggagatgttcaccggcactagagagatccaggactggctgacggag
agcgccaggctcatctctaagtcgggcagcacggtagagtgggtgacacccctgggcctt
cccatcatccagccctaccaccgcagccggacacagatgctgaaggccaccatccagtac
ctgagtttccagatcacccacgactctaaagagagaccagacactgtgaaacagaagaat
gccttccctcctaacttcatccactctctggactccacacacatgatgctgactgctctc
tactgctacagcgccggcctgacgttcgtctccgtacacgactgcttctggacccacgcc
atcacagtcgacaccatgaacaaggtttgccgggagcagtttgtggcactgcacagccag
cccatccttcaagagctgtccaacttcctactgaagaaatactgttctgggctacagagc
gaggtcaaaagcaaaaagtttctggagtaccagagaatgctgctgctgctggccaaagtg
ccccaaacaggcaactttgatctccagcgggtaaaggaatccacttacttcttcagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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