KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112251978
Entry
112251978         CDS       T05605                                 
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13-like isoform X1
  KO
K11836  ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:otw01002]
    112251978
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:otw04121]
    112251978
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:otw04147]
    112251978
Enzymes [BR:otw01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     112251978
Peptidases and inhibitors [BR:otw01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   112251978
Ubiquitin system [BR:otw04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    112251978
Exosome [BR:otw04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   112251978
SSDB
Motif
Pfam: UCH UBA zf-UBP_var zf-UBP UCH_1 UBA_4
Other DBs
NCBI-GeneID: 112251978
NCBI-ProteinID: XP_042178855
Position
LG06:8921980..8963464
AA seq 879 aa
MAADLGELLVPYMPTIRVPRTGDRVFKSECAFSYDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMLLKRHVKEKATGAAGGAISRRRNGRVFLDLELNRDFNGDEYECEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAALNAASAYKKQESDSWDEEIQVSKHARSLRQQD
NGVRIPPSGWKCQKCEMRENLWLNLTDGAVLCGKWFFDGAGGNGHALDHYKDTNFPLAVK
LDNITADGADIYSFDEEEAVLDPHISEHLQHFGIDMLQMQQNGTENGHLNTDNTDNTDNT
DNTESVRPRVSEWEVIQESGMKLKEVYGSGFTGIKNLGNSCYLGTTMQVLFSIPEFQRAY
VGNLQRIYDYSPLDPTTDFSTQMAKLGHGLLSGLYSKPPMKSELIEQVMREEYKHQSKGI
SPKMFKAMVSKGHPEFSSNRQQDAHEFFLHLINLVERNSAGSENPSDVFRYLVEERVQCC
QTQKVCYNQKVDYLMQLPAPMEAASNREELIAYEAKRREAEENMRAPPEPVRARIPFTAC
LQAFTEPENVPDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGVDWVPKKLDLSID
VPDFLDLSRLRGTGLQAGEEELPDLTPPIVLPEDTRDDSMNSSDSPDIDESAAMQLAEMG
FPLEACRKAVYYTGNMGPEMAFNWIIAHMEEPDFAEPLALPSFMEPGPSMASLGLAATPL
DNQPPEESIAILTSMGFPRRHTVQALKATNNNLERALDWIFTHPEREEEEEEEPSDDLLD
MSDIMEPNDNTFSNANTNSHSTLSPDQDASGPRIKDGPGRYELFAFISHMGASTMSGRYV
CHIKKEGRWVIFNDHKVCLSERPPKDLGYIYFYRRLSSC
NT seq 2640 nt   +upstreamnt  +downstreamnt
atggctgcagatttaggagagctgcttgtcccttatatgcccaccatcagagttcccaga
acaggagacagggttttcaagagcgaatgtgccttttcctacgattctcccgagtctgag
ggaggcttgtatgtgtgtatgaacacattcctgggctttggcagagaacatgtggagaga
cattaccgtaaaaccggacagagtgtttacatgctcctcaaacggcatgtcaaagagaaa
gccacaggtgccgcaggaggcgccatctccagaagaagaaatggcagagtgttcctagat
ttagaactgaaccgtgattttaacggggatgagtatgagtgtgaagacgaggccaagctc
gtcatattcccagaccacttcgagatccccttaccaaatattgaggagttgcctgcactg
gtgacaatagcctgtgatgccgcgctcaacgctgcgtcagcctacaaaaagcaggagtct
gactcctgggacgaggagatccaggtgtccaaacacgccaggagtctccgacagcaggac
aacggagtgaggatcccacccagtggttggaaatgtcagaagtgtgagatgagagagaac
ctgtggctgaacctgacagatggagcggtgctttgtgggaagtggttcttcgacggtgct
ggaggaaacggccacgccctggaccactacaaagacaccaacttccctctggcagtcaaa
ctggacaacatcaccgcagatggagcagatatatattcatttgatgaagaagaagcagtc
ctggaccctcacatatccgaacacttgcaacactttggaatagacatgctacagatgcag
cagaatggaacagaaaatggccacctcaacacagacaacacagacaacacagacaacaca
gacaacacagagagcgttcggcctcgggtcagcgagtgggaggtgatccaggagtcgggc
atgaagctgaaggaggtgtacggctcaggtttcacgggcattaagaacttgggtaacagc
tgctacctgggcaccaccatgcaggtccttttcagcatcccagagttccagagggcgtat
gttggaaatctacagaggatctatgactactcacctcttgaccccaccacggatttcagc
acacaaatggctaaactgggccacggacttctctcaggcctgtactccaaaccaccaatg
aaatccgagctcattgaacaggtgatgagagaagaatacaagcaccagtcgaagggcatc
tctcccaagatgttcaaagccatggtcagcaagggccaccccgagttctcctccaacaga
cagcaagacgcacacgagttcttcctgcacctcatcaacctggtcgagagaaacagtgct
ggctcagagaaccccagtgatgtcttccgctacctggtggaggagcgtgtgcagtgctgc
cagacgcagaaggtgtgctacaaccagaaggtggactacctgatgcagctcccggccccc
atggaggctgcctccaacagagaggagctgatagcgtatgaggccaagcgaagagaggca
gaggagaacatgagagcccctccagagcctgtgagggcccggatccccttcacagcgtgc
ctgcaggccttcacagagccagagaacgtccccgacttctggagctcagcactgcaggcc
aagtcagctggagtcaagacttcccgtttcgcctccttcccagagtatctggtagtgcag
attaagaaattcacatttggggttgactgggttccaaagaaattagatctgtccatagac
gtaccagacttcctggacctgtctcgactccggggcacagggctgcaggcaggagaggaa
gagctccctgacctcaccccccccatcgtcctgcctgaagacaccagagatgactcaatg
aactcctcagattccccagatatagacgagtcggcggcgatgcagctggcggagatgggc
ttccctctggaggcctgtcggaaggccgtttactacacagggaacatgggccctgaaatg
gccttcaactggatcatagcccacatggaggagcctgactttgctgagcccctggccctt
ccttccttcatggagccaggcccctccatggccagcctgggcctggcagccacccccctg
gacaaccagcctccggaggagagcatcgccatcctcacatccatgggcttcccccgccgc
cacacagtccaggccctcaaagccacgaacaacaacttggagagggctctggactggatc
ttcacccacccggagagggaggaggaggaggaggaggagcctagtgacgaccttttggac
atgtctgacatcatggagcccaacgacaacaccttctccaacgcaaacacgaacagccac
tccacgctgtccccagaccaggatgcctcgggcccccggatcaaagacggacccggacgt
tacgagctttttgctttcatcagccacatgggagcgtccactatgtctggtcgttatgta
tgtcatatcaagaaggaaggaagatgggtgatcttcaatgaccataaagtgtgtttgtca
gaaaggcctccaaaagacttgggctacatctacttctaccgtcggctgtctagctgctag

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Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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