KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112252394
Entry
112252394         CDS       T05605                                 
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
  KO
K08532  RAR-related orphan receptor alpha
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112252394
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:otw03310]
    112252394
Transcription factors [BR:otw03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    112252394
Nuclear receptors [BR:otw03310]
 1. Thyroid hormone like
  1F. RAR-related orphan receptor
   112252394
SSDB
Motif
Pfam: zf-C4 Hormone_recep
Other DBs
NCBI-GeneID: 112252394
NCBI-ProteinID: XP_024279340
Position
LG06:complement(30273951..30537122)
AA seq 526 aa
MESPPDPASDPANSASEPATPARETPVNLETLRKADHPAPVRRQTCSSTNRGGLTNKQGI
SVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLI
DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQRDHQQQPG
EAEPLTPTYGLSANGLTELHDDLSGYMDSHTPDGSKPDSAVSSFYLDIQPSPDQSGLDIN
GIKPEPICDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQ
MTWQAFLQEEMESYQTKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK
AGSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSE
DEIALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTL
RALCSRHTEKLTAFKAIYPDIVRSHFPPLYKELFGSDFEQSMPIDG
NT seq 1581 nt   +upstreamnt  +downstreamnt
atggagtcccctccagatccagcaagcgacccggccaacagcgcctccgagccggctacc
ccggccagggaaaccccggtaaacctggagacgctccgaaaagcggaccatccagcccct
gttcgaaggcagacctgttcaagcaccaacagaggtggactcacgaacaagcagggtatt
tcagtaacaaagaagacacatacctctcaaatcgaaataattccctgcaagatctgtgga
gacaaatcatcaggcatccattacggtgtgataacatgcgaaggctgtaagggcttcttc
aggaggagtcaacagagcaatgcggcctactcatgcccccgtcagaagaactgcctgatc
gaccgcaccagccgcaaccgctgccagcactgccggctgcagaagtgtctggcagtgggc
atgtcacgggacgcggtgaagtttgggcgcatgtcgaagaagcagcgggacagcctgtat
gcggaggtgcagaaacaccggctgcagcaggcgcagcgtgaccaccagcagcagcccggc
gaggccgagccactcacacccacctacggcctctcggccaatggcctcacagagctccac
gatgacctcagtggctatatggacagccacacccccgacggcagcaagcccgactcagca
gtcagcagcttctacctggacatccagccctcccctgaccagtccggcctggacatcaat
ggcatcaagcctgagcccatctgcgacttcgcccccggctcaggcttcttcccctactgc
tcctttaccaacggagagacatcccccaccgtgtccatggctgagctagagcacctggcc
cagaacatctccaagtcccacatggagacgtgtcagtacctgagagaggagctgcagcag
atgacctggcaggccttcctgcaggaggagatggagagctaccagaccaagccccgggag
gtcatgtggcagctgtgtgctatcaaaatcacagaggccatccagtacgtggtggagttt
gccaagcgcatcgacggcttcatggagctgtgtcagaacgatcagatagtgcttctgaaa
gcaggctctttggaggttgtgtttgtcagaatgtgccgtgccttcgactctcaaaacaac
acagtctatttcgatggaaagtatgctgggcccgatgtgtttaagtcattaggctgtgac
gatttgatcagctccgtcttcgagtttgggaagaacttgtgttctatgcacctgtctgag
gatgagatcgccctgttctccgcgttcgtgttgatgtctgcagaccggtcctggctccag
gagaaggtgaaggtggagaaactccagcagaagatccagctggcactgcagcatgtcctg
cagaagaaccacagagaggatggcatactcaccaagttgatatgcaaagtgtcaacactg
cgagcactgtgcagcaggcatacagagaagttgacggctttcaaagcaatatacccagac
attgtgcgttcccactttcccccgttatataaggagctcttcggatcggactttgagcag
tccatgcccattgacgggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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