KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112256604
Entry
112256604         CDS       T05605                                 
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
  KO
K13171  serine/arginine repetitive matrix protein 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013  Nucleocytoplasmic transport
otw03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    112256604
   03015 mRNA surveillance pathway
    112256604
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112256604
   03041 Spliceosome [BR:otw03041]
    112256604
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     112256604
Spliceosome [BR:otw03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR-related proteins
    112256604
SSDB
Motif
Pfam: PWI
Other DBs
NCBI-GeneID: 112256604
NCBI-ProteinID: XP_024285707
Position
LG08:complement(33006681..33029243)
AA seq 870 aa
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVVKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDDEKKEKENRERESPRRRKSRSQSPRRRSPVKR
ERKRSHSRSPRRKPSPSSSPPPPAPAVTLVSVTLPQSTEEPQPEPDTSESTIPEPVIQEA
SSTSDVVKPDTVVVVPDSVTEVKEPSPDKAPKKERPKPREREKDSRRDRPHHRSRSHSRS
RRRPRSRSRSYSPRRRPSPRRRLSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGS
SSTSHSPHKKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPSGKTQRSASPRARKG
RASASPSRSAGSKKKPGTRNDSPSPVAKPRQSEASESEGATADSVQQRRQYRRQNRETSS
EAGSSSSSEGEGSKRPGRGPVARNGDVRRRRSHSPSSPRRRHRDGSPRKRRSPSPGGRRS
PPRRRRSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPSPKRL
SPVPKRRPSRSPKRRSPPPQKRRTPPSSTSPPRHRRSPMLPSNRPGRDTRSPPLAHSNRL
SPSPANRGRTSPQGRFDTSPPGQRRQVSPSHGNRAIRRVSRTPEPRKNQRASQSPQPMRR
VSSRSPSGSPKPGALKRPASGSPSPGHSASGSPPAPPAKKASSGSGSPSPNKNSDTEPGG
KKNKKKKKEKKHKKEKKHKKHKKHKKEKCDVPVAAGDDQENQGMEGDVASNPKKESDSEV
EECLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq 2613 nt   +upstreamnt  +downstreamnt
atggacgcgggtttcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaggtcgtcaaaccttggatcactcagcgagtgacagagatcctg
gggttcgaggatgacgtcgtcatagaatttatatttaaccagctggaagaaaagcacccg
gacagtaagatgatgcagatcaacctgactggcttcctgaatgggaagaatgcccgagag
ttcatgagggacctgtggcctctgctgctcagcgctcaagacaacatcgccggtatcccc
tccgccttcctagagcagaagaaagaggagatcaaacagagacagattgagcaagagaag
ctcgcttctctgaagaagattgatgatgagaagaaggaaaaggaaaacagagaaagggag
agccccagaaggaggaagtcaaggtcgcagtctccacggcgacgatctccagtgaagagg
gagaggaaacgcagtcactcccgctcaccgaggcgtaagccaagtcccagcagctcccct
ccaccaccagccccagctgtcacccttgtcagtgttaccctgccccagagcactgaggag
ccccagcctgagccagacacctcagagagcaccatacctgagccagtcattcaggaggcc
tcctccaccagtgatgtggtaaagccggacactgtggttgtggtacctgactctgtgact
gaggtcaaagaaccctccccagataaggctcctaaaaaggagaggcccaagcccagggaa
agggagaaggacagcaggagagacaggccccaccaccgctctcgctcccattcccgctcc
cgcagacgacccagatcacgctccaggtcttactccccccggcggaggccgagccccagg
agacggttgtcccctcgtcgtaggagcccccccagacgtggccctccaggccccagacac
aggcgcagtcgctcccctgtccgcagacggcgctctcgctccccatcatcctctgggagc
agctccacgtctcactcacctcataagaaggcaatgaagagaacgtcaaccacaccaccc
agaaaacagccccgcggccatgcagctgacccctccctcagcccctccaggagaagagcc
cccaatggcagcccctctgggaagacacaacgctctgcctccccgcgggccagaaagggc
cgggcctcagcctccccatccagatcagctgggtcaaagaagaaaccaggaacgaggaac
gattcaccgtcccctgttgcgaaacccaggcagtctgaggcatcagagtcagagggggct
acagccgattctgtgcagcagcgacgtcagtatcgcaggcagaatcgggaaacgtcttca
gaggctggatcatcatcatcctcagaaggtgaggggtccaagaggccgggcagggggcca
gtggcgaggaacggggatgtcaggcggcggcgcagtcactcgccctcctcccccaggaga
cgacaccgggacggctccccgagaaaaagacgctctccttcccccggaggacgcagatct
cccccaaggcgtcgcagatctccctctcctcctcctaggcgcaggtctccctctccacca
cctcgcagacgctccccctcccccagacggtactctccacccatccagcggcgatacagc
cccactcctttgggcccacagaaaagaaggctgtcagggtctccctctcccaaacgccta
tccccggtgcccaagcgccgtccctccaggtcccctaagcgcaggagtccccctccccaa
aagagacgcacacctccctcatccacctctccccccagacacaggagaagccccatgctc
ccatccaaccgaccaggccgggacactcgctcacccccccttgctcacagtaaccgcctg
tccccttcccctgccaaccgtggccgaaccagtcctcaggggcgctttgacacctctcca
cctggacagaggcgccaggtgtccccctcacacggcaacagggcaatccgcagggtgtcc
cggacaccagagccccgcaagaaccagagagcctctcaaagcccccagccgatgaggaga
gtgtcatcaaggtcaccgtctggatcccctaaaccaggagccctgaaacggccagcttca
ggctccccttctccaggccactcagccagtggatccccacctgcacccccggctaaaaag
gccagcagcggctctggcagcccttctccaaacaagaattctgacactgagcctggagga
aagaaaaacaagaagaagaagaaggaaaagaaacacaagaaggagaagaagcataagaag
cacaagaaacacaagaaggagaagtgtgatgtgccggttgctgctggggatgaccaggag
aaccaggggatggagggcgacgtagcctccaacccaaaaaaggaatcagacagtgaagta
gaagagtgtctggacgacctggagaagcacctgagagagaaggcactgcgttccatgagg
aaagctggaaagctgtcccctccactgtcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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