KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112256765
Entry
112256765         CDS       T05605                                 
Symbol
mnat1
Name
(RefSeq) CDK-activating kinase assembly factor MAT1 isoform X1
  KO
K10842  CDK-activating kinase assembly factor MAT1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022  Basal transcription factors
otw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    112256765 (mnat1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    112256765 (mnat1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:otw03021]
    112256765 (mnat1)
   03400 DNA repair and recombination proteins [BR:otw03400]
    112256765 (mnat1)
Transcription machinery [BR:otw03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     112256765 (mnat1)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     112256765 (mnat1)
SSDB
Motif
Pfam: MAT1 zf-C3HC4_5 zf-RING_5 zf-RING_UBOX TRAF3_RING zf-C3HC4 zf-UDP zf-RING_2 TRAF6_Z2 zf-P11
Other DBs
NCBI-GeneID: 112256765
NCBI-ProteinID: XP_024286008
Position
LG08:complement(26709001..26772741)
AA seq 314 aa
MTPEMDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDMLFVRGSGNCVQCDTPLRKS
NFRVQLFEDPAVDKEVEIRKKVLKIYNKRDFDFSNLREYNDYLERVEEIVYNLTNNLEVE
GTKQIMEAYQRENRDIIQKNKAKLTREQEELEELLLLEQQGNEQRRLETLQEEQRQLQAK
RKSKQALLDELERSHVPATILLAQHKDRAAQLETQIEKQKQVVKTTIFSTGIPMGQTVSL
LTVNRLEEVLYHYQPIHMHTYGPPVPELEQLGRLGYLNHVRTAQPQDMAGGYNSGLACHR
AIQDAFSGLFHPLG
NT seq 945 nt   +upstreamnt  +downstreamnt
atgactcctgagatggacgaccaagggtgtccgagatgcaagacaacgaaatacaggaat
ccttccctgaaactgatggtgaatgtttgtggccacacgctatgtgagagctgtgtggac
atgctgtttgtgcgcggctcggggaactgtgtgcagtgcgacacgcccctgaggaagagt
aacttccgtgtgcagctctttgaagaccctgccgtcgacaaggaggtggagatccgtaag
aaggtgctcaagatttacaacaagagagactttgacttctccaacttgagagaatacaat
gactacttggagcgagtggaggagatcgtctataacctgaccaacaacctagaggtggag
gggaccaaacagatcatggaggcttaccagagagagaatagagacatcattcagaagaac
aaggccaagctgactcgagagcaggaggagttggaggagctgctgctgttggagcagcag
gggaatgagcagcgcaggctggagactctgcaggaagaacagagacagttacaggctaag
aggaagagcaagcaggctctactggatgaactggagcgctctcatgtccccgccaccatc
ctgctggcccaacacaaggaccgggctgcccagctggagacccagattgagaagcagaaa
caggtggtcaaaactaccatcttctccaccggcatccctatgggtcagactgtgtcgctg
ctgactgtgaaccggttagaagaggttctgtaccactaccagcccatccacatgcacaca
tacggaccccccgtccctgagctggagcagctggggcgactcgggtatttgaaccacgtg
cgtactgcccagccccaggacatggctggaggatacaactcaggactggcgtgtcatcga
gccatccaggatgccttcagtgggctcttccatccactgggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (10)   
   Pfam (10)   
All databases (26)   

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