KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112258840
Entry
112258840         CDS       T05605                                 
Symbol
rad23aa
Name
(RefSeq) UV excision repair protein RAD23 homolog A isoform X1
  KO
K10839  UV excision repair protein RAD23
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420  Nucleotide excision repair
otw04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    112258840 (rad23aa)
  09124 Replication and repair
   03420 Nucleotide excision repair
    112258840 (rad23aa)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:otw03051]
    112258840 (rad23aa)
   03400 DNA repair and recombination proteins [BR:otw03400]
    112258840 (rad23aa)
Proteasome [BR:otw03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    112258840 (rad23aa)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      112258840 (rad23aa)
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin Rad60-SLD Rad60-SLD_2 Crinkler UBA_3 Dsc3_N Ubiquitin_2 OTU1_UBXL
Other DBs
NCBI-GeneID: 112258840
NCBI-ProteinID: XP_042183538
Position
LG09:79717026..79723978
AA seq 353 aa
MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK
DYKIDEKNFVVVMVSKAKSATAASTPSSEAPKAPVQDSGSSAGPAPAAIPIPPEEPTPTV
AEPPAPASSDLSVEVQGGDASSALVTGAEYETMLTEIMSMGYERESVVAALRASFNNPHR
AVEYLLTGIPSSPVQETNPPAQLPASARTGTETPTVAEGENPLEFLRSQPQFQSMRQVIQ
QNPSLLPALLQQLGRENPQLLQQISQYQELFIQMLNEPAGEVGDVPEVGDLGAAVEEGAP
VNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQGFEDE
NT seq 1062 nt   +upstreamnt  +downstreamnt
atgcaaatcacgttaaaaacactgcaacagcagaccattcaaatcgacatagacccagat
caaacggtgaaggcactgaaggagaagatagaagcagagaggggaaaagataacttccca
gtgtctggacagaagctcatatatgctggcaaaatcctgcaagatgacacacctattaaa
gactacaaaattgatgagaagaattttgttgtagttatggtatctaaggcaaagtctgcc
acagctgcttcaacaccttcctcagaggcacccaaggcccctgtccaggactctgggtcg
tctgcgggcccggcccctgcagccatccctatccccccagaggagcccacacctacagtc
gcagagcccccagctccagccagctcagacctcagtgtggaggttcaggggggggatgcc
tcctctgccttggtgacaggagcggagtatgagaccatgctgacagagatcatgtctatg
ggttatgagagggagagcgtggtagctgctctccgggccagcttcaacaacccccatcgg
gccgtggaatacctcctcactggcattcctagcagtccggtccaagagactaatccccca
gcacagcttcctgcatctgcccgcacaggcacagagacccctactgttgctgagggagaa
aaccctctggagttcctgcgttcccagcctcagttccagagcatgaggcaggtgatccag
cagaacccctcactgctgccagctctgctccaacagctgggccgggagaacccacagctc
ctacagcaaatcagccagtaccaggagctgttcatccagatgctgaatgagccggcgggg
gaggttggagacgtgcctgaggtgggggacctgggtgctgcagtggaggagggagctcca
gtcaactacattcaggtcacacctcaggagaaagaagccatcgagaggttaaaagcgttg
ggtttccccgaggcgctggtgatccaggcctactttgcatgtgaaaagaacgagaaccta
gcagccaacttcctcctgaaccagggctttgaggatgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system