KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112258872
Entry
112258872         CDS       T05605                                 
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112258872 (ddx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:otw03041]
    112258872 (ddx5)
   03009 Ribosome biogenesis [BR:otw03009]
    112258872 (ddx5)
Enzymes [BR:otw01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     112258872 (ddx5)
Spliceosome [BR:otw03041]
 Complex A
  U1 snRNP components
   U1 related factors
    112258872 (ddx5)
 Complex B
    112258872 (ddx5)
Ribosome biogenesis [BR:otw03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    112258872 (ddx5)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_C_2 ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 112258872
NCBI-ProteinID: XP_024289276
Position
LG09:81818274..81823720
AA seq 615 aa
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFYQ
EHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNMR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQI
NVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYPN
NSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGGH
SRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGASGF
DKSGNGFGGGYGTNGQSNYGASQAGVFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQQA
PQPMVPYPMPPQFPQ
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgcctggattttctgacagagatcgtggtagagatagaggatatggcagtggaccacct
cgttttggaggcggtggaagaggtggtggtggggggaagtttggtaatcccggtgatcga
ctgcgcaagaagcactggaaccttgacgaactctctaaatttgaaaagaacttttaccaa
gagcacccagatgttactcggagatctccgcaagaggttgcacagtacagaagtactaaa
gcggttactgtgaagggaagggactgccctaatccaattatgaagttccatgaagccagt
tttccaacctacgtgatggatgtcattaacaaagcaggctggtcagaaccaacaccgatc
caagcacagggttggccactggctttgagtggcaaggacatggttggtattgcacagacg
ggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacattaatcaccagcct
ttcctggaacgtggagatggccctatttgcttagtgcttgccccgacccgtgagctggct
cagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtctgtctgt
gtttatgggggtgcgcccaaagggccacagctccgtgacctggatagaggtgtggagatt
tgcattgccacacctggcaggcttattgacttcctggaggcaggaaagaccaacatgcgc
agatgcacttacctggtactggatgaggctgaccgaatgctcgacatgggtttcgaacca
caaatccgaaaaattgtggaccaaatcagacctgaccgacagacactgatgtggagtgcc
acttggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtccagatc
aatgtgggagctctgcagctgagtgccaaccacaacatcttgcagatcgtggatgtttgc
aatgatggcgagaaagaagacaaactcctccgccttctagaggagatcatgagtgagaag
gagaacaaaaccataatctttacagagaccaagaggagatgtgacgagatcactaggagg
atgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcaggagagg
gactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccacagacgtc
gcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactaccccaac
aactctgaggactatatccaccgcattggcagaactgcccggagccaaaagactggcaca
gcctacaccttcttcacccccaacaacatgaggcaggccagtgacctcgttgctgtgctc
cgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggtcat
tcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcctcc
gggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggttttgacagt
ggaccaaagaaagtctttggcacaaattcacagagtggaggttatggggcaagtggcttt
gacaaaagcggcaatggttttggcggcggctacggcaccaacggccagtcaaactatggt
gccagccaggccggggtgttcccaacgcagaacttccaggccccacagtttagtgccaac
caaggcggtgcacagagtggcatgagccatcaacagttccccttcacacagcagcaagca
ccacagcccatggtgccttacccaatgccccctcaattcccacagtaa

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