KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112260435
Entry
112260435         CDS       T05605                                 
Name
(RefSeq) deubiquitinating protein VCPIP1
  KO
K11861  deubiquitinating protein VCIP135 [EC:3.4.19.12]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:otw01002]
    112260435
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:otw04121]
    112260435
Enzymes [BR:otw01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     112260435
Peptidases and inhibitors [BR:otw01002]
 Cysteine peptidases
  Family C64
   112260435
Ubiquitin system [BR:otw04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   OTU
    112260435
SSDB
Motif
Pfam: VCIP135_N OTU OTU1_UBXL ubiquitin
Other DBs
NCBI-GeneID: 112260435
NCBI-ProteinID: XP_024291310
Position
LG10:53542012..53549441
AA seq 1186 aa
MSLLQGSKKKDKRILSGTCPDPKCQARLFFPAYGSISIECTECGQRHEQNNLLNVEEVTD
PDVVLHNLLRNALLGVTGAPKKGTELVKVMGLSNYHCKLLSPILTRYGMDKQTGKAKLLR
EMNQGEMFDCSLLGDRAFLIEQEHVSTVGYGKDRSGSLIYLHDTLEEMKKANSNKECLIP
VHVDGDGHCLVHAVSRALVGRELFWHALRENLKQHFKQNLDRYKALFQDFIDAAEWEDII
NECDPLFIPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSASFLPGLVPEE
QCKGKDGKFNKPICIAWSSSGRNHYIPLVGIKNTLLPKLPPRLLPKAWGVPQELIKKYIK
LEQDGSCVIGGDRSLQDKYVMRLVNAMEEIFMEKHGIHPSLVADVHQYVYRRTGVIGVQP
EEVTEAARKSVMENRLHRCLICNALSELHVLPEWLAPGGKLYNLAKSTHGKLRPDKNYSF
PLNKVVCCYDPERDILIPDYKLSSLNTCNWCHGTSVRHIHGNGSVVYLDGDRTNTRSQGG
KCGCGFKHYWEGKEYDNLPEAFPITLEWGGRVVRETVYWFQYEVNVDLNSNVYDVAMKLV
TKHFPGEFGSELLVQKVVNTILHHTAKKNPDEYNPVSIDGAHAQRLTDVVETQQAVDKQP
PTKIILTGQKSKTIHKEELTVSKAERSLQQSISEQALVTQKRRTDRLKQEQKGQGRPPSP
SAAQEHSSSPATPTKSSFSPTSSKEKKIRVTTSDGRQAMLTLQAQTTFSELQRSIANEFT
MPPAQQCIRHGFPPKELFPPKDGAENEPVALQHGDRVTVEILRGPEDRKASAPSASSSHS
TLHSLLSVKSDDPVTSSRMNTSRELQDNIDLEMSSLCLLATLMGEDVWSYAKKLPHLFHQ
GGVFYNIVKKDMGLMDGKHCTLPHLTGKTFVYNAAEERLELCVDAAGHFPVGPDVEDLVK
EALVQLRSEAASRSREGSPSHSLLRLGSGGVVRKKEQLQSVNAFQGKGHSLGSAPGGSPP
EHKPITRQHSSGVDLSASASKGPDLSDISEDATKELVRMAPGFVTMKDSRHLDPSMIEEQ
RKKLQEMVSSIQASMDRHLREQSNAGAGIGGPAERTSGAKMSASQSAPGAGVKEASSMDV
STAGAHGTSVEAGNKPDGKDAGSEELEEMDSQDAEHTNALEPMDHS
NT seq 3561 nt   +upstreamnt  +downstreamnt
atgtcgttgctacagggctccaagaaaaaggacaagcgtattttgtccggtacctgccca
gacccgaaatgccaggcgaggctattcttccctgcttacggttcgattagcattgaatgc
acagagtgtggccaacgccacgaacagaataatcttttaaatgtggaagaagtaactgat
ccagacgttgtgcttcacaatttgttaagaaatgccttactcggtgtcactggtgcaccg
aaaaagggaacagagctggtgaaagtgatggggctttccaactaccattgcaagctcctt
tctcctattctcacaaggtatggaatggataagcagacgggaaaagcgaaactgctgcgg
gaaatgaatcaaggagaaatgttcgactgttcacttctaggagacagggcgtttctaatt
gaacaggagcatgtatctacggttggctatggcaaggaccgatccgggagcctgatatac
cttcacgacactttggaggagatgaagaaagcaaacagcaacaaagaatgcctcattcct
gttcatgtggatggagatggacattgtcttgttcatgctgtgtccagggccctggtaggc
agagaactgttctggcatgccttgagagagaatttgaaacaacatttcaaacaaaacttg
gatcgctacaaggcactctttcaggattttattgatgcagccgaatgggaggacatcatc
aatgaatgtgaccccctgtttatcccaccggagggtgtgccactgggacttcggaacatt
cacatattcggcttggccaatgtgttgcaccgccccataatcttgttagattcactgagt
ggaatgaggagctctggggattactctgcaagttttctccctgggcttgtgccggaagag
cagtgcaaaggaaaagacgggaagtttaacaagcctatatgcatcgcctggagtagctca
gggcgtaaccactacatccccctcgtcgggataaagaacacccttctccccaagctgcca
ccgaggcttctccccaaggcatggggagtgccacaggagctcatcaagaagtatataaag
ctggaacaagatgggagctgtgtcatcgggggagacaggagcttacaagacaagtatgtg
atgagactggtcaatgccatggaggagatcttcatggagaagcatggaatccacccctcc
ctggtggcagatgtgcatcagtacgtttacagacggaccggtgtgatcggcgtccaaccc
gaagaggtgacggaggctgccaggaaatcagtcatggaaaaccggctacatcgctgtctg
atctgcaatgcactctctgagcttcatgttctacctgagtggctggctccaggtggtaag
ctttacaacctggctaaatccacccacgggaagctcagacctgacaagaactacagcttc
ccgctgaacaaggttgtctgctgttacgaccctgagagggacatcctcattcctgactac
aagctgagctctttgaacacatgcaactggtgccacggcacctccgtgcgccacatccat
ggcaacggctctgtggtgtatctggatggagacagaaccaacacccgttcccaggggggc
aaatgtggctgcggctttaagcactactgggagggaaaggaatacgacaatctgccagag
gctttccccatcactctggagtggggtgggcgggttgtgcgggagactgtgtactggttc
cagtatgaggttaatgtggacctgaacagcaacgtgtatgatgtcgccatgaaactggtc
accaagcatttccctggggagtttggcagtgagctcctagtgcagaaagtggtgaacacc
attttacatcacactgccaagaagaacccagacgagtataacccagtctccattgacggg
gcgcatgctcagaggctcacagacgtggtggaaacccagcaggctgttgacaaacagcca
ccgactaagatcatactaactgggcagaaatcaaagaccattcacaaagaggagcttaca
gtgagtaaggcagagcggagccttcagcagagcatcagcgagcaggccctagtgacccag
aagaggaggacggatcgactgaagcaggagcagaagggacagggcaggccaccctcccca
agtgctgctcaggaacattcctcctccccagccacacccaccaaatcctccttctccccc
acttccagcaaggagaagaagatccgtgtcaccactagcgatgggcggcaggccatgctc
actctacaggctcagaccaccttctctgagctccagaggagcattgctaatgagttcacc
atgcctccagcccagcaatgtatccgacatggattcccacccaaagaacttttccctccc
aaggatggagcagagaatgaaccggtggctctccaacacggggacagggtgactgtggag
atcctgagaggtccagaggaccgcaaggcatccgccccaagtgcttccagttcccattca
accctgcattccctcctctctgtgaagagtgatgatccagtgacttccagcagaatgaat
actagcagagagctgcaggacaacattgaccttgagatgtcctccctctgtctcctagca
accttaatgggagaagatgtctggtcatatgccaaaaaactgcctcacttattccaccaa
ggtggagttttctacaacattgtgaagaaagatatgggcctgatggatggcaagcactgc
accctcccacacctgactggaaagacgtttgtttacaacgcagcagaggagcgtctggag
ctgtgtgtggatgcagcgggacactttcccgtgggccctgacgtggaggacctcgtcaag
gaggccctggtgcagctccgctctgaagctgcctccaggagtcgcgagggaagcccctct
cacagcctgctgaggctcgggagtggaggtgtggtgcgtaagaaggagcagctccaaagt
gtcaacgccttccagggtaagggccactccctgggcagcgccccaggtggctctccccct
gaacacaagcccatcaccaggcagcacagcagcggggtggacctgagcgccagcgcctcc
aagggacctgacctgtctgacatctcagaggacgcgaccaaggagttggtgcgcatggct
cccggttttgtcaccatgaaagacagccgacacctggaccctagtatgatcgaagaacag
aggaaaaaactacaggagatggtctcatccatccaggcctccatggacaggcacctgagg
gagcagagcaatgcaggggcaggcattgggggccctgcagagaggacaagtggggctaag
atgagtgcttcccaatctgccccaggggcaggcgtaaaggaggcctcttctatggatgta
tctactgctggtgctcatggcacatcagtggaggcagggaacaagcctgatggaaaggat
gcagggtcagaggagctggaggaaatggatagccaggatgcagagcataccaacgccctg
gagccaatggatcattcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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