KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112260956
Entry
112260956         CDS       T05605                                 
Name
(RefSeq) collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510  Focal adhesion
otw04512  ECM-receptor interaction
otw04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:otw00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    112260956
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    112260956
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    112260956
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:otw04147]
    112260956
   00536 Glycosaminoglycan binding proteins [BR:otw00536]
    112260956
Exosome [BR:otw04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   112260956
Glycosaminoglycan binding proteins [BR:otw00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   112260956
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 112260956
NCBI-ProteinID: XP_042185260
Position
LG10:12377564..12629988
AA seq 1676 aa
MKFWICVLAVSWAVEATHGGTSQEPCNGLDCSGGCNCNPEKGSRGRPGALGPLGPGGPEG
FPGDQGPLGQKGEKGHFGRMGPSGLKGDKGPMGVPGFPGNDGVPGHPGQDGGRGLPGFDG
CNGTQGDPGPRAVDGGIPGASGLPGPTGPKGQKGEPVYVGTREGAPGLPGLDGVPGPRGP
NGRPGDIGPSGPDGPDGFLGNPGPPGPPGPVGSPSLGFRGEPGAKGNTGPPGPRGVPGDE
SLVGSSITTIYKGDKGEVGYKGVRGPSGRTGPPGPFGYPGEKGENGILGYPGGRGPPGFN
GPPGSPGRPGFTGSPGFPGQPGYSGPKGDQGEQGPPGPPIYADTQGLAVQGAPGDNGIDG
FPGQPGDTGSPGFPGQPGRPGDSFGDGREGSPGFPGTLGPKGERGNPGRQSYGPEGLPGG
PGLPGPPGPPGPPGRSVNNQPGRFDNLPGAPGRPGGQGPPGASGYKGPKGELGDCNCLGG
DTTGGVGAPGAPGSDGRPGAFGRKGESGDPGIPGFGGQPGTPGRVGERGFFGRKGEKGAS
FYPSFSGGIQGEQGAQGLRGPPGNMGRPGRDGLPGSPGQPGPPADVDGYGTIGERGFPGF
SGAKGRAGEPGQNGIGYQGSIGSRGFPGDSGFAGLPGQPGLPGPPGLTLPCRLPGEDGIP
GLPGIPGRLGPKGEPGFPGGPGRPGFDGGKGERGDPGYGGQPGPQGFPGPRGDAGGPGIP
GEGRPGAPGKNGLPGRPGGKGRPGEVLGSSTGLPGTPGFPGGPGDKGEPGASGLPGGSGF
DGRSGIPGAKGERGTDGYPGTLGLPGLPGDRGNGFPGPAGPAGSKGFPGSPGYPGLKGAR
GDTGYPGPTGRKGQPGQPGGDGSSGLRGLLGPPGPGGRNGIPGGPGRKGESGYPGLVGFP
GMPGNPGRPGGPGGKGALGFSGKDGLPGDFGAPGPKGDQGYRGLPGPPALPPRIDYLEKG
QRGDNGANGLPGFPGPRGDKGFPGQPGRQGLPGLPGYADRAKGEPGLPGLPGRPAGPGYP
GPIGSPGIIGFPGMPGPRGDDGRPGFPGNPGVPGQPGAKGERGDSSGYPGSPGAKGESGT
PGYPGGQGANGAPGDNGFPGGPGFSGQKGEAGVPGRPGLLGTPGFTGAKGLNGYPGGRGL
DGTTGRPGSPGSSGEKGLSGSPGLDGLNGLAGPNGLPGTPGYSEEGRPGTPGAAGLKGER
GSSIPGPPGYNAEKGARGESGGPGMTGFPGLPGRRGETIGSNIPGPLGDPGLPGLDGEEG
YGGPPGPPGPPGPSTAQGDRGDAGLPGFPGTPGRRGDPGGPGGPGREGSPGFNGERGDSG
YSGVSGTKGYPGDPGYYGGKGPKGRKGSSGRKGPPGITLPPSNFETPYGDLGGPGLNGAP
GAMGEPGNPGIPGRVGPKGRPGAVGKLGRNGGSGLDGPLGDPGSPGFPGPSGSQGLPGKP
GLQGPPGSVARSRSVGFTLVKHSQNNQVPMCPQGMSRLWEGYSLLYVEGQEKAHNQDLGM
AGVLSPSVPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPVGEEAISQYISRCSVCEAM
SQAVAVHSQDLTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFI
ECNGAKGTCHFFANKYSFWLTTVEPNREFNPPPMDTLKGGNQLSRVSRCQVCSKIL
NT seq 5031 nt   +upstreamnt  +downstreamnt
atgaaattctggatttgtgtacttgctgtcagctgggcagttgaagcgacacacgggggg
accagccaggagccctgtaatgggctggactgtagtggaggatgtaactgtaacccagag
aaaggtagcagggggcgtccaggggcattggggccattaggacccggtggaccagagggg
ttcccaggtgaccaaggccctttagggcaaaaaggagagaagggccacttcggacgcatg
ggcccctctgggctgaaaggagacaaggggcccatgggcgtaccagggttcccaggaaac
gacggagtcccaggtcacccaggtcaggacggtggcaggggtctaccagggtttgatgga
tgtaacggtacccagggagacccaggtcccagagctgtagatggaggaatacctggagct
tcaggactccctgggcctacgggtcctaaagggcagaagggcgaacctgtatatgttgga
accagagagggagctcctggtttgcctggactggacggtgtacctggtcctagaggccct
aatggaaggcctggtgacatcggccccagtggtcctgatggtcctgatggattccttggt
aatccaggtccccccggtccccctggtcctgtagggagccccagcctcggcttccggggg
gagccaggagctaagggcaacacggggccacccggacctcgaggcgtgcccggcgacgag
tcgctagtaggctcatctattaccaccatctacaaaggagataagggggaagtgggttac
aaaggagtgcgtggaccatctggtagaaccggcccacctggtccttttggctatcctggc
gagaagggagagaatggaattctggggtatccagggggacggggtcctcctggttttaat
ggacctcccggatctccaggaagaccaggattcacaggcagtccagggttccccgggcaa
ccaggctacagtggacctaagggtgaccagggggaacaggggcctcccgggccccccatc
tacgcagacacacaagggttggctgttcaaggagcaccaggtgacaatggtatcgacggc
ttccccggccaacctggtgacactggctctccagggtttccaggacaaccaggacgacca
ggcgactccttcggcgatggtcgagaaggcagcccagggttccctggcaccttaggacct
aagggagagaggggtaaccccggcagacagagctacggccctgagggcctaccaggagga
ccaggattaccaggaccccccggacctcctggaccaccaggcagatctgtcaacaaccag
cccggcaggtttgacaatctaccaggagcgccaggacgaccaggaggccagggaccacct
ggagccagcggatacaaaggacccaaaggggaactgggtgactgtaactgcctgggagga
gacaccacgggtggggtgggggctccgggggctcctgggtctgatggaagacctggtgcc
ttcggcaggaagggcgaaagtggagacccaggcatacccggtttcggaggacaaccagga
acacctggccgtgtgggcgagaggggtttcttcgggcgtaaaggagaaaagggtgcctcc
ttctacccctcgttcagtggagggatccagggtgaacagggggcccagggccttcgaggg
ccccctggaaacatgggccgacccgggagagacggacttcctgggtcccccggacagcct
ggacctcctgctgatgttgatggctatggaaccattggagagagaggattcccagggttc
tctggcgccaaaggtcgcgccggtgaacctggacagaacgggattggctaccagggttcc
atcggctcccgtgggtttccaggcgactcgggctttgcagggttaccagggcaacctggt
ttacctggccctccagggctgacgctaccatgtcgtctacctggtgaggatggaatccca
ggcctccccggaatacctggaagactaggtcccaagggcgagccaggtttcccaggtggc
cccggtcggcccggttttgacggagggaagggagagagaggagacccaggttacgggggc
cagcctgggccacaaggtttccctggccccagaggagatgcgggtggcccaggtatccca
ggcgagggtcgtccaggggccccagggaagaacgggctcccggggaggccaggggggaag
ggccggccgggggaggtgctggggtcctcaacagggctccctggaacacctgggttccca
ggaggaccaggagacaagggagagccaggagcatcaggacttcccggaggatcaggtttt
gatggtcggtcgggcattcccggagctaagggtgagcgcggtacggatggctaccccgga
actctaggtcttcccggacttcctggagacagaggcaatggatttcccggtcctgctggc
ccagccggaagcaaaggatttcccggttctccaggctaccccggtttaaaaggagccaga
ggtgacacgggctacccaggcccgactgggaggaagggacaaccaggacaaccaggaggg
gatggatcatcaggactcaggggccttctgggaccaccgggcccagggggaagaaacggc
atccctgggggaccaggaaggaagggcgagagcggttaccctggactggtaggtttcccc
ggaatgccaggtaaccctggaagacctggtggaccaggaggtaaaggagctctggggttc
tcaggaaaagacggcctgcccggtgacttcggagcgccaggacctaaaggtgaccaaggt
taccgtggtctccctggcccacccgctctgccccccagaatagattacctggagaaggga
cagaggggcgacaacggtgccaacggactacctggtttccctggacctagaggtgacaag
ggtttcccaggccagcctggtcgtcagggtttgcccgggctgcctggttatgctgacagg
gctaaaggggaaccaggactccccggtctccccggacgcccagccgggccaggctaccct
ggccctattggatctcccggtatcatcggcttccctggcatgcctggaccaaggggtgac
gatggcaggcctggtttccctggtaaccctggagtccctggtcagccaggtgctaaaggg
gagagaggtgactcatccggctaccccggaagtcccggagctaaaggtgagtccggaacc
cccggttacccaggtggccaaggtgctaatggcgcccccggcgacaacggtttcccaggg
ggccctgggttcagcggacagaagggagaagcgggagttcctggaagacccggactcttg
ggtacccctggtttcactggggctaagggtctgaacggatacccaggaggaagaggtctc
gacgggacgactggccgccccggctcccctggatcatctggagaaaaaggtctgtcggga
tctcctggtcttgatggactcaacggactggctggaccgaacggtctaccaggaacccca
ggttatagtgaggaggggcgccccggcacccctggagcggccggtttgaagggagagagg
ggatcctccatcccaggacccccgggatacaacgcggagaagggagcgagaggagagtca
gggggtcctggtatgacgggcttcccaggtctgcctggtcgtcgtggggagacaatcggc
tccaatatccctggacctctgggagacccaggcctgcccggactcgatggagaagaaggt
tacggtggtcctccaggccccccaggcccaccggggcccagtacggcccagggagacagg
ggtgacgctgggctacctggcttccccggcacccctgggagacgtggagaccctggaggt
cccggtggcccaggaagggaaggcagccctgggttcaatggagagagaggcgactctggg
tacagtggagtgtcaggaaccaaaggctaccctggagatccaggatattacggagggaaa
ggacccaaaggaaggaaaggttcttctggtcgtaaggggcccccaggtataactttacca
ccctcgaacttcgagactccctatggagacttgggaggccctgggctcaacggagctcca
ggggccatgggagaaccaggcaatcccggcattccaggcagagtgggtcctaaaggcagg
cccggggcggtggggaagctggggaggaacggagggtcaggtctggatggacctctggga
gaccctggttctcctggtttccctggaccttccggatcacaaggtctgcctggtaagcct
ggtctgcagggtccccctggcagtgtggcccgcagcaggagtgttggtttcaccctggtg
aaacacagtcagaacaaccaggtacccatgtgtccccagggcatgtcccggctctgggag
ggatacagtctgctgtacgtagaggggcaggagaaggcgcacaaccaggacctcggtatg
gcgggcgtactgtccccttctgtccccttcctctactgcacgcccaacgagatctgttac
tacgccagccgcaacgacaagtcctattggctgtccaccactgcgcccatccccatgatg
ccggtgggagaggaggccatcagccagtacatcagcaggtgctctgtgtgcgaggccatg
tcccaggctgtggccgtccactcccaggacctcaccatccccacctgccctgctggctgg
aggtccctctggatcgggtactccttcctcatgcacacagctgccggggcagagggcgga
ggccagtcccttgtttcacccggctcctgtctggaagacttccgtgcaactcccttcatc
gagtgtaacggggctaagggcacctgccacttctttgccaacaagtacagcttctggctg
accacggtggagcctaaccgcgagttcaacccccctccgatggacacgctgaagggaggc
aaccaactcagcagagtcagtcgctgtcaggtctgcagtaagatcttgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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