KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112264469
Entry
112264469         CDS       T05605                                 
Name
(RefSeq) small nuclear ribonucleoprotein Sm D1
  KO
K11087  small nuclear ribonucleoprotein D1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112264469
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:otw03041]
    112264469
   03032 DNA replication proteins [BR:otw03032]
    112264469
Spliceosome [BR:otw03041]
 Complex A
  U1 snRNP components
   Sm proteins
    112264469
  U2 snRNP components
    112264469
 Complex B
  U1 snRNP components
    112264469
  U4/U6.U5 tri-snRNP components
    112264469
 Complex C
  U2 snRNP components
    112264469
DNA replication proteins [BR:otw03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     112264469
SSDB
Motif
Pfam: LSM Gemin7 Hfq SM-ATX API5
Other DBs
NCBI-GeneID: 112264469
NCBI-ProteinID: XP_024296854
Position
LG13:complement(22047930..22051229)
AA seq 159 aa
MTPMVLRRNVFYTQLPVRSVLRCNFFLSLVEILSLQIITNMKLVRFLMKLSHETVTIELK
NGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLL
VDIEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR
NT seq 480 nt   +upstreamnt  +downstreamnt
atgacgccgatggtcctgcgacgaaacgtattttatacacagctgcctgtgcgttcagtt
ctgcgctgtaatttttttttgtctttggtggagattttgtctctgcaaatcatcaccaac
atgaaactcgtacggtttttaatgaaactcagccacgagactgtgaccattgagctgaag
aatggcacccaggtccatggaacaatcacaggtgtggatgtgagtatgaacactcatctg
aaggcggtaaagatgactctgaagaaccgtgagcccacccagctggagagcctcagtatc
cgtgggaacaacatcagatacttcatcctgccggacagcctgccgctggacactctgctg
gtcgacatagaacccaaggtcaagagcaagaagagagaggctgtggctgggcgtggaagg
ggcagaggaagagggcgtggcagggggagaggccgaggcaggggagggcccaggagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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