KEGG   Opisthorchis viverrini (Southeast Asian liver fluke): T265_06498
Entry
T265_06498        CDS       T04902                                 
Name
(RefSeq) hypothetical protein
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
ovi  Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03022  Basal transcription factors
ovi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ovi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    T265_06498
  09124 Replication and repair
   03420 Nucleotide excision repair
    T265_06498
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ovi03021]
    T265_06498
   03400 DNA repair and recombination proteins [BR:ovi03400]
    T265_06498
Transcription machinery [BR:ovi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     T265_06498
DNA repair and recombination proteins [BR:ovi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     T265_06498
SSDB
Motif
Pfam: PH_TFIIH BSD
Other DBs
NCBI-GeneID: 20320677
NCBI-ProteinID: XP_009170036
UniProt: A0A074ZG93
Position
Unknown
AA seq 825 aa
MSKQKEDVLLMVKHVRYKKVDGTLYVNSGRVAWRNQTSDSFKISAAFEDIRVQRISPDQK
EKVQLQLLMHNGESFTFQFADPAGRQKQLEMRNSVKEMLQGLLPKFKDKAHSELKEKFRL
LESNPEILALYKELVVTGILSSEEFWTRPEFVTLTPKSSSFDGVAPGSQRKSDSRVTQNT
SNHAQTAPDTSSSTTGQISRSFNLADKPQALGVPSNLLSDIKPEADGVNGIKYNLTHDTI
DAIFRAYPTVRQRHRELVPDKLSEADFWVKFFQSHYFHRDRVQIPKEDIFAECANLDERH
FQNELRRSRRNRISACLDLENLSDHDLGSGYGSECVSTSSAPNTLNSADMPKAADGTKTP
SSQSSNYSANQLLLRRFNNHSLLVLKSLGAGDIASGLSCSTSVAESSGHLGASQESPSTV
MSTSLKERVYGPELADTPPQPHYPLELAGVSDYLEGPVSIDQSITEHSSTVHPPKQPSFS
FSPSQLMRGLKRCQTSVTAAYQSKRKPHAPVVTTLDAQLALVDVSPGGCLVGGKGVPDEL
KSSRTDRTETNETVGCRVPLDASHPTRNPSSTPGQARATPSTGNDMDRSPAMLNSEQLRE
LALLYASASELLRHFWACFPVTNQQLVEKLERIATSLTRFRTTKVVHFAASLDSSSGKPD
SSLPSHNSDGGLSRGTIAPQSYRPRVTSHLECMLDAAQRKGNGIKCTDQVIRFLVMFCLL
PNALIDPGWSAEFSQCTLLFVWIVVRIINLSPQIPAQTGFLYALDCSSPNCSDEPSAGSS
NWLLSPEQKKIHRSTFEGCTVPISDRCMDSTDNFHSEFAASPDHE
NT seq 2478 nt   +upstreamnt  +downstreamnt
atgtcgaagcaaaaggaggacgttcttctgatggtcaagcacgtacgctacaaaaaagtc
gatggaaccctatacgtcaattcgggccgagtcgcttggcgcaaccagacatcggacagc
ttcaagatcagtgctgcgtttgaagatatcagagttcagcgtatcagccctgatcaaaag
gagaaggtgcaacttcagcttctaatgcacaatggggaatcgttcacctttcaatttgct
gacccagccggaagacaaaagcagttggagatgaggaacagtgttaaagaaatgctccaa
ggtctacttccgaaatttaaagacaaagcccattcagaactcaaagaaaagtttcgactg
ctggaatccaatccggaaatcctggctctgtacaaggaactcgttgtgacgggaattctt
agctccgaagaattttggaccagaccggagtttgttacccttacaccgaagtcttctagc
tttgacggtgtcgctcctggatctcagcgcaagtccgattcacgcgttacccaaaacaca
tcaaaccatgctcagactgctccagatacgtcttcctcaacaacgggccaaatttctcga
agcttcaaccttgcagacaaaccacaggctctaggagttccaagcaatctgctcagcgat
attaaaccggaagcagacggtgttaatggtataaagtacaacctcacgcacgacacaatt
gatgcgattttccgtgcttatcccaccgtccgccagcgtcatcgtgaacttgttcccgac
aagttgtccgaggccgatttttgggtcaaattttttcaatcgcactactttcaccgggac
cgtgtacagattcccaaggaagatatttttgctgagtgtgccaatctggatgaacgtcat
tttcaaaacgaactacgccgttcccgtcgaaatcggatttcagcatgtctagatctggaa
aatctttccgaccatgacctaggatctggttatggctctgaatgtgtgtcgacgtcctcc
gcgcccaacacactaaactcagctgatatgccgaaggctgctgatgggacgaaaactcct
tcgtcgcagtctagcaactattcggccaaccagcttctacttcggagattcaataaccat
tcccttctggttttaaaatctctgggtgccggtgatattgcaagtggtttgagctgcagt
acaagtgtagctgagtcatcgggacacttgggtgcttcccaagaatctccatccacagtt
atgtcaacatcgttaaaagaacgggtctatggtccagaacttgctgacactccaccacag
ccacattatccactggagctcgccggtgtcagtgactacctggaaggtcccgtgtcgata
gatcagtcaatcacagaacattcatctactgtacacccgcctaagcagccatctttttct
ttctctccctctcagctgatgcgtggtttgaaaaggtgccaaacatcggtaacagcagcg
tatcaatctaaacggaaaccgcatgctccagtggtaacaacattggatgcacaattggcc
cttgtggacgtttcccctggaggttgccttgtgggagggaaaggtgtacccgatgaacta
aaatcttcccgaactgatcgaactgagaccaatgagaccgttggctgccgcgttccgctt
gatgcctcgcaccctacccgaaaccccagttctacaccagggcaggcacgtgctactcca
tctacaggcaatgatatggatcgaagtcccgccatgctaaattcagagcaactgcgtgag
ttggccctgctttatgcgagcgcctctgagcttctgcgacatttctgggcctgttttccg
gtgacaaatcaacagttggttgagaaattagaacgcattgccacaagtctcacccgcttc
cgtacgacgaaggtggtacacttcgcggcttctttggattcttcttctggaaagcctgat
tccagtttaccctcacacaactccgacggtggtcttagtcgaggtacgatagctcctcaa
tcgtatcgaccgcgagtcaccagtcaccttgaatgtatgctcgatgctgcacagcgcaag
ggaaatggaatcaaatgtactgatcaggttatcaggttccttgtcatgttctgtttgctc
cccaacgccttgattgatcctggttggtctgcggaatttagtcaatgcacactacttttc
gtctggatagtagtgcgaattattaacttatccccccaaattccagctcaaactggtttc
ctttatgcactcgactgttcgtcacccaactgctctgacgagccaagtgccggaagttct
aactggttgttaagccctgagcagaaaaaaatccatagatcaacttttgaggggtgcaca
gttcccatttccgatcgatgtatggactcgacggacaactttcattctgaattcgcggcg
tcaccagatcacgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (35)   

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