KEGG   Oxynema aestuarii: HCG48_06635
Entry
HCG48_06635       CDS       T06528                                 
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
oxy  Oxynema aestuarii
Pathway
oxy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oxy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HCG48_06635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oxy03019]
    HCG48_06635
   03016 Transfer RNA biogenesis [BR:oxy03016]
    HCG48_06635
Enzymes [BR:oxy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     HCG48_06635
Messenger RNA biogenesis [BR:oxy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HCG48_06635
Transfer RNA biogenesis [BR:oxy03016]
 Prokaryotic type
  tRNA degradation factors
   HCG48_06635
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1
Other DBs
NCBI-ProteinID: QIZ70292
UniProt: A0A6H1TUM3
Position
1643045..1645447
AA seq 800 aa
MEFSIATLLANFTDDKLVAPKVLEKKLGCQDRTTLRKLQIALDALEKIGILVKDKGRYRR
AWDDNLVEAKLRCSSKGFCFAIQDKEGTEDIYIRECHLSNAWNGDRVLVNIIKEGSRRRS
PEGEVRLILERSNPSVLARVKQEGSQYKAVPLDDRLLFELDIKANGVELEKAIEHLVHVE
VVRYALGPYPPLGRVAQILGSDAEEANDLDIVCCKHDLPRLFADVAHAEIDGLPKQLRKA
DLKNRLDLRKVETIAILPEAVNGSDRPLVERAFTIESLKDNKFRLGIHVCDAAFYIKPDT
ALDREARKRGTTVHLGETILPLVPDSLARDRCSFFPGEDRLAISILIVVDEDANAIEYEI
QPSVIHLDRYVTNAEADPILQEMAGHTELQGIPEWWRDVQQQQYSSEKPEAISEEIAQML
EQLFALSYSLQQRRRENGAFELNLPPNQYGICPSPYQDEGIQGVVSACSHLNTEGMLSEF
VILANHLVALHVQELGVPAVYRVQPPPDLDEVEDLIKLASNMGVEILLDDEEDVTSVDYQ
DFTEVFAASTCERVLTYLLESTLKPTAYSTIPSSHFGLAMECYSHCTSPLQRYPDLLIQR
LLHAVFDIGRDRKSTRSKDRVNLHHSSCHGQITWNVLPPDVHHEFESDFSSVVGHLTERE
KLVQEAEADLEGLKKAGLMKERTGETFQGLITGVQSYGFFVEIEVDSDRRGPLRLEGLVH
VSSLKDDWYEYRRQQTLVGRKNRKQYSLGDWVEVQVKSVDYYRQQIDLVAVGGGSEAPST
DDDIDYRPRDRNYDYEDDED
NT seq 2403 nt   +upstreamnt  +downstreamnt
atggaattttcaatcgctacactgctggccaattttaccgatgataagttggtcgcaccc
aaggtcttagaaaaaaaattggggtgccaagatcgcacgactctgcgaaaactccagatc
gctttagatgccctggagaaaattggcatcttagtcaaagacaaaggtcgctatcggcga
gcgtgggacgataatctggtcgaagccaaactccgttgctccagcaagggattttgtttt
gcaattcaagataaagaagggacggaagatatttatatccgcgaatgccatctgagcaat
gcttggaacggcgatcgcgtcttggtcaatatcattaaagaagggagtcggcggcgatcg
cccgaaggcgaagtccgcttgattctcgaacggtccaacccttccgtactcgcccgcgtc
aaacaagaaggttcccaatataaagccgttcctttagacgaccgtcttttatttgaactc
gatatcaaagccaatggcgtcgaactcgaaaaagcgatcgaacatctcgttcacgtagaa
gtcgttcgctatgccctcgggccgtatcctcccctcggtcgcgtcgcacaaatcctcggc
agtgacgccgaagaagctaacgacttggatatcgtctgctgcaagcacgacttaccgcgc
ctgtttgccgacgtggcccacgccgagatcgacggcttgcccaaacaactgcgtaaagcc
gatctcaaaaaccgtctcgacttacgcaaagtcgaaacgatcgcgattttacctgaagcc
gtcaacggcagcgatcgccccctggtcgaacgggcctttaccatcgaaagcctcaaagac
aataaattccgcttgggaattcacgtctgcgatgccgccttttacatcaaacccgatact
gccctcgatcgcgaagcgcgcaaacgcggcaccaccgttcacctcggcgagaccatttta
cctttagttcccgacagcctcgcccgcgatcgctgttccttcttccccggcgaagaccgc
ctcgccatctcgatcctgattgtcgttgacgaagatgccaatgcgatcgaatacgaaatc
caacccagcgtcatccatctcgatcgctacgtcaccaacgccgaagccgatccgatcctt
caggaaatggccggacataccgaactgcaagggatccccgaatggtggcgggacgttcaa
cagcaacaatactccagcgaaaaacccgaagcgatctccgaagaaatcgcccaaatgctc
gaacaactgtttgctttgagctattccttgcaacaacgacgccgggaaaatggggcattt
gagttgaacttacccccgaatcaatacggaatttgtccctcaccgtaccaagatgaaggc
atccaaggcgtcgtcagcgcctgctcgcacctcaacactgagggcatgttgagcgaattt
gtgatcttggccaatcacctcgtcgcccttcacgtgcaagaactcggcgttcccgccgtt
tatcgcgtgcaaccgccaccggatctcgatgaagtcgaagatctgattaaattggcgagt
aatatgggggtcgaaattctcctcgacgacgaagaagatgtgacctctgtagactatcag
gattttaccgaagtcttcgccgcctctacctgcgagcgcgtgctgacctacctgctcgaa
tcgaccttaaaaccgactgcctacagcacgattccctcatctcatttcggtttggcgatg
gagtgctacagccactgcacctcgccgttgcaacgctatcccgatttgttgatccaacgc
ttgctacacgccgtgttcgacatcgggcgcgatcgcaaatctactcgttccaaagaccgg
gtcaacctccatcacagcagttgtcacggtcaaattacctggaacgtcctgcctcccgac
gttcaccacgaattcgagtccgatttcagttccgtggtcggtcacctcaccgaacgggaa
aagttagtccaagaagcggaagcggacctcgaagggttgaaaaaagctggactgatgaaa
gaacgcacgggggaaaccttccaaggcttgattaccggggttcagtcttacggatttttc
gtcgaaatcgaggtcgattcggaccgacgcggaccgttacgcctcgaaggtttggttcac
gtctcctccctcaaggatgattggtacgagtatcgccgccagcaaactttggtcggacgc
aagaaccgcaagcaatacagcctcggggattgggtcgaagtgcaagtgaaaagcgtcgat
tactaccgccagcaaatcgatctggtcgccgttggcgggggtagcgaagcccccagtacc
gacgacgatatcgattatcgcccgcgcgatcgcaattacgattacgaagacgacgaagat
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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