KEGG   Oxynema aestuarii: HCG48_20215
Entry
HCG48_20215       CDS       T06528                                 
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
oxy  Oxynema aestuarii
Pathway
oxy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:oxy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HCG48_20215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oxy03021]
    HCG48_20215
   03400 DNA repair and recombination proteins [BR:oxy03400]
    HCG48_20215
Enzymes [BR:oxy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HCG48_20215
Transcription machinery [BR:oxy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HCG48_20215
DNA repair and recombination proteins [BR:oxy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HCG48_20215
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 Cas9-BH
Other DBs
NCBI-ProteinID: QIZ72629
UniProt: A0A6H1U4S6
Position
5053348..5055228
AA seq 626 aa
MPKLEQRFDYVKIGLASPDRIRVWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKGI
PSYMSILLDMPLRDVEQIVYFNAYVVLNPGNAENLQYKQLLTEDAWMEIEDRLYSEDTEL
TGVEVGIGAEALQRLLQDINLESEAESLREEIANSKGQKRAKLIKRLRVIDNFVATGSQA
EWMVLSYIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRN
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKIHQCGLPREMAIELFQPFVIHRLIRAGLVNNIKAAKKLIQRNDPSIWDVLEE
VIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL
EAQAEARLLMLASNNIMSPATGRPIVTPSQDMVLGCYYLTAENPHQQKGAGRHFANLDDA
IVAYEQQEVDLHAYVWVRLDPEEWDVEEEALEGKPKVETLADGTVSKTYPYSRVREDADG
NVLSLYVYTTPGRIIFNKTIQEALAV
NT seq 1881 nt   +upstreamnt  +downstreamnt
atgccaaagctcgaacagcgttttgattatgtcaaaattggtctggcatctccggatcgg
attcgtgtatggggggaaagaacgctaccaaacgggcaagtggtcggggaagtcaccaaa
cccgaaacgatcaactaccgcaccctcaaaccggaaatggacgggctgttttgcgagcgg
attttcggtccggccaaagattgggaatgtcattgcggtaaatacaagcgcgtccgccac
cgggggatcgtgtgcgagcgctgcggcgtcgaagtgaccgaatcgcgagtgcgccgtcac
cggatgggctatattaagttagccgctccggtggctcacgtgtggtatctcaaagggatt
cccagttacatgtcgatcttgctggacatgcccttgcgcgatgtcgagcaaattgtttac
ttcaatgcctatgtggttctcaatccgggcaatgcggagaatttgcagtacaaacaactg
ctcaccgaagacgcctggatggaaatcgaggatcgactgtatagcgaagacaccgaactc
accggggtcgaagtcgggatcggggccgaagccctgcaacgcctgctccaagatatcaat
ttagagtcggaagccgaaagcctgcgcgaagagatcgccaactccaaaggacaaaagcgg
gccaaactgatcaaacggctgcgggtgatcgataacttcgtcgccaccggatcccaagcc
gaatggatggtgttatcctacattcccgtgattccgccggatttgcgcccgatggtacag
ctcgacggcggacggtttgccacctccgacctcaacgacttgtatcgccgggtgatcaac
cgcaacaaccgtctggcgagattgcaagagattctggcgccggagattatcatccgcaac
gaaaaacggatgttgcaagaagcggtagacgccctgatcgacaacgggcgccggggtcgc
accgtggtcggcgccaacaaccgaccgctcaaatccctgtccgacattatcgaagggaaa
caagggcgcttccgtcagaacttgctcgggaagcgggtcgattattccggtcgttccgtg
atcgtggtcgggccgaaactgaagatccaccaatgcggactgcctcgggaaatggcgatc
gagttgttccaaccgttcgtgattcaccgtttgattcgcgccggactggttaacaacatc
aaagcggcgaagaaactgattcagcgtaacgatccgagcatttgggacgttctcgaagaa
gtgatcgaaggacacccggtgatgctcaaccgggcgccgacgttgcaccgcttgggaatt
caagccttcgagccgattttggtagaagggcgcgccattcaactgcacccgttggtctgt
cccgcctttaacgccgacttcgacggcgaccaaatggcggttcacgtcccgttatcctta
gaagcgcaagcggaagcgcgcttgttgatgctggcgtcgaacaatatcatgtctccggcg
acggggcgtccgatcgtgacgccgtcccaggatatggtgttgggttgttactatttaacc
gcagaaaacccgcaccaacaaaaaggggccgggcgtcattttgccaatctcgacgacgcg
atcgttgcttacgaacaacaagaagtggatttacacgcttacgtgtgggtgcgcctcgac
cccgaagagtgggacgtcgaagaggaggcgttggaaggaaaaccgaaagtcgagacttta
gccgatggaaccgtcagcaagacgtacccgtacagtcgggttcgcgaggatgcggacgga
aacgtgttatcgctctacgtttacacgacgccgggacggattatttttaacaagacgatt
caggaagcgctggcggtttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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