KEGG   Pyrococcus abyssi: PAB1912
Entry
PAB1912           CDS       T00024                                 
Name
(GenBank) TATA box binding protein TFIIB-BBRE complex, chain B
  KO
K03124  transcription initiation factor TFIIB
Organism
pab  Pyrococcus abyssi
Pathway
pab03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PAB1912
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pab03021]
    PAB1912
Transcription machinery [BR:pab03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     PAB1912
 Prokaryotic type
  Archaeal type
    TFB
     PAB1912
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon HARE-HTH Sigma70_r4 zf-RRN7 RB_B LysW-like_globular Zn_Tnp_IS1595 HTH_Tnp_ISL3 Auto_anti-p27 A2L_zn_ribbon Trm112p OrfB_Zn_ribbon FYDLN_acid FtrD-like Prim_Zn_Ribbon YceG MLD Lar_restr_allev
Other DBs
NCBI-ProteinID: CAB49598
UniProt: Q9V0V5
Position
complement(638733..639635)
AA seq 300 aa
MTKQRVCPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGA
PESILLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIT
AQLKLPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR
VEKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYKRG
LTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLGIKVPVT
NT seq 903 nt   +upstreamnt  +downstreamnt
gtgaccaagcaaagggtttgtcccgtttgtggatcaaccgagtttatttacgaccccgaa
aggggtgaaatcgtctgcgcacgctgtggatatgtaatcgaggagaacatagtcgatatg
ggaccagaatggcgtgcttttgatgcttctcagagggagaagcgttctaggacgggtgcg
ccagagagtattttacttcatgacaaggggttgtcgacggatattggcattgataggagt
ttgactgggttgatgagggagaagatgtacaggcttaggaagtggcagtctaggcttaga
gttagtgatgccgccgagcgtaatcttgcattcgccctaagcgagttggatagaattacc
gcccagttaaagcttccaaagcacgttgaggaggaagctgctaggctttatagggaagca
gtaagaaagggtttgatcaggggtaggtctatagagagcgttattgcagcctgcgtttac
gcggcttgtaggctattaaaagtcccgaggactcttgacgaaattagtgatattgctagg
gttgagaagaaggagattgggaggagttatcgttttattgcaaggaatctaaacttgact
ccaaagaaactctttgtaaaacctactgattacgtgaacaagtttgctgacgagcttggg
ttaagcgagaaggttaggaggagggctattgaaattttagaggaggcttacaagaggggt
ttaacgagcggtaaaagcccagcgggattagttgccgcagcactctacattgcatccctc
ttggaaggagagaagagaacccaaagagaagtagcagaagtagcaagagtaacagaagta
acagtaagaaacagatacaaagaactagtagagaagcttggaataaaggttcccgtcact
tga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (19)   
   Pfam (19)   
All databases (28)   

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