KEGG   Syntrophotalea acetylenica: A6070_04230
Entry
A6070_04230       CDS       T04585                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pace  Syntrophotalea acetylenica
Pathway
pace03030  DNA replication
pace03410  Base excision repair
pace03420  Nucleotide excision repair
pace03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pace00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A6070_04230
   03410 Base excision repair
    A6070_04230
   03420 Nucleotide excision repair
    A6070_04230
   03430 Mismatch repair
    A6070_04230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pace03032]
    A6070_04230
   03400 DNA repair and recombination proteins [BR:pace03400]
    A6070_04230
Enzymes [BR:pace01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A6070_04230
DNA replication proteins [BR:pace03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A6070_04230
DNA repair and recombination proteins [BR:pace03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A6070_04230
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A6070_04230
   MMR (mismatch excision repair)
    DNA ligase
     A6070_04230
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A6070_04230
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH RNA_pol_A_CTD zf-NADH-PPase
Other DBs
NCBI-ProteinID: APG45287
UniProt: A0A1L3GK76
Position
complement(929054..931069)
AA seq 671 aa
MNKAEAKSRHRQLCAELHRHNLLYYTHDRPEISDAEYDQLFRELQELEQAHPELVTPASP
TLRVGAAPLVQFEPVRHALPMLSLENALNEAELRDFDARVKRFLGREQTVRYVCELKIDG
VAVELVYRDRVLAVGSTRGDGATGEGITENLRTIPSIPLVLSGDAPTLLEVRGEVYIDLG
DFQTFNQERQEEGLQVFANPRNAAAGSLRQLDSSVTARRPLKIFCYGIGQFSGALPTSHH
ELLQQLHQWGLRVNLDHTRTFEGIEPVVDYFRQLQDMRDRLPYEIDGLVVKVDELALQRE
LGEKTRSPRWAIACKFPPRQAVTIVEDIILQVGRTGAITPVAQLRPVEVSGVTVSRASLH
NWDEIARLDVKIGDTVIVERAGDVIPDIVRVLMEHRNGSERSVPLPQYCPVCGGPVAKLE
GEVVPRCQELSCPARLRESIKHFVSRRAMDIDGLGERTIEQLLRLELIDSVADLYRLTRE
DLLRCERLADKSADKLLKAIIASKSRPLGRFLFALGIRHVGEHLASLLARHFGSLEEVCR
ATREELLAIHEIGPQVADSVIDFFAKTRNREILSALQKAGVAPQVETRRGNGPLTGRIFV
FTGSLTRLNRKQAQQTVERLGGRASGSVSGKTDWVIAGEAAGSKLAKARELGIRILSEEE
FLQMMSEMEKA
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgaacaaggccgaagccaaaagccgccaccggcagctgtgcgccgagctgcaccgccac
aacctgctttattatacccacgaccgtccggaaatatcggatgccgaatacgaccagctt
ttccgggaactccaggaactggaacaggcccatcccgaactggtgacgcccgcctcgccc
accctgcgggtaggcgcggcgccgctggtacagttcgagccggtgcgccacgcgttgccg
atgctgtcccttgaaaacgccctcaacgaggcggaattgcgggattttgacgcccgcgta
aaacgcttcctgggccgcgaacaaaccgtgcgctacgtctgcgaactgaagatcgatggc
gtagcggtggagctggtctatcgtgaccgcgtccttgccgtcggctctacccgtggcgac
ggcgccaccggcgagggtatcaccgaaaatctgcgcaccatcccttccatccccctggtt
ttgagcggcgacgcccccacgctactggaagttcggggcgaagtgtatatcgatctgggc
gatttccagaccttcaatcaggaacggcaggaagaaggcctgcaggtgttcgccaatcct
cgcaacgcggctgccggcagcttgcgccagctcgactcgtcggtaaccgccaggcggccc
ctgaaaattttctgctacggcatcggccagttctccggtgcgttgccgaccagtcaccac
gaactgctgcagcaacttcaccagtggggactgcgcgtgaatctggaccacacccggacc
ttcgaggggatcgagccggtcgtggactatttccggcaactgcaggacatgcgcgaccgg
ctgccttacgaaatcgacggcctggtggtaaaagtcgacgaactggccctgcagcgcgaa
ctgggagaaaaaacccgttccccgcgctgggccatcgcctgcaaattcccgccgcgtcag
gccgttaccatagtcgaggatatcatcctgcaggtcggacgcaccggcgccatcaccccc
gtggcccagctcaggccggtggaagtcagcggcgtcaccgtgtcgcgcgccagcctgcac
aactgggacgaaatcgcccgactggatgtcaaaatcggcgacacggtgatcgtggaacgt
gccggagatgtcataccggatattgtcagggtgttgatggagcaccgcaacggcagtgag
cgcagcgtgcctctgccgcaatactgcccggtctgcggcggaccggtggcaaaacttgag
ggcgaagtggtccctcgctgccaggaattgtcctgtccggcacgcctgcgcgaatcgatc
aagcacttcgtctcccgccgtgccatggacattgacggcctcggcgaacgcaccatcgag
caactgctcaggctggagctcatcgacagcgtggcggacctctaccggcttacccgggaa
gacctgctgcgctgcgaaagactggccgacaaatcggcggacaaactcctgaaagccatt
atagccagcaaatcccgcccgctcgggcgcttcctcttcgccctgggaatccgccacgtg
ggggagcacctcgccagcctgctggcccgccatttcggctcactggaagaagtgtgccgc
gcaacacgcgaggagctgcttgccattcacgaaatcggcccccaggtggccgacagcgtc
atcgactttttcgccaagacgcgcaaccgtgaaatcctctccgccctgcagaaggccggc
gtggcgccacaagttgaaacccggcgcggcaacggcccgctgaccggcaggatcttcgtt
ttcaccggcagcctgacccgcctcaaccgcaaacaggcgcagcaaaccgtcgaacgcctt
ggcggacgcgccagcggctccgtcagcggcaaaaccgattgggtaatcgccggagaagcg
gccggcagcaaactggccaaggcgcgtgaactggggattcgcattctcagcgaagaggag
ttcctgcagatgatgagcgaaatggaaaaagcatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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