KEGG   Pediococcus acidilactici: A4V11_09110
Entry
A4V11_09110       CDS       T04512                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
paci  Pediococcus acidilactici
Pathway
paci03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:paci00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A4V11_09110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paci03019]
    A4V11_09110
   03016 Transfer RNA biogenesis [BR:paci03016]
    A4V11_09110
Enzymes [BR:paci01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A4V11_09110
Messenger RNA biogenesis [BR:paci03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A4V11_09110
Transfer RNA biogenesis [BR:paci03016]
 Prokaryotic type
  tRNA degradation factors
   A4V11_09110
SSDB
Motif
Pfam: RNB CSD2 S1 OB_RNB
Other DBs
NCBI-ProteinID: AOW75173
Position
1912212..1914563
AA seq 783 aa
MESSKLQASIINYLERRPTQKFTAEELFKGLSLEKASVFNELVKELTSLERSHKVEITAD
DKFKIARPQNQLLVHGTFRANDRGFGFVAVEDDEIPDIYISEEHTAYALNLDEVDVKIVR
PSKKGDDRGPEGIVKKITKRHLTQAVGVFEFAPDPAHNVLGHINLKDKKMSNYEFDVLEG
GIHPEDGAVITAQVTQYPKPNAPKLIAGVAEKTIGYRDDPGVDILEIVYQHELPTEFPDD
VKEEIAQIPDHVTEAEKQGRVDLTNEVVVTIDGDDSKDFDDAVGLQKLDNGNYRLLVNIA
DVSHYVKEGSPLDKEAYRRSTSVYLTDRVIPMLPRKLSNGICSLNPNVERLAMTCEMEIS
PDGEVLSHKIYPSVIESNARMTYNDVNKILEARDKKTIERYQDLVPMFEMMGKLHKLLLK
RRKQRGAIEFDDNEAQIIVDENGHPIDIKVRERGTSERMIESFMLAANETVAEHYYDAHV
PFLYRIHETPDSERMLTFFEFLSTFGHVVKGSTKDLKPKMLQSVLKKVAGTREEAMISVM
LLRSMRQAKYDARSLGHFGLAAKYYTHFTSPIRRYPDLFVHRLIRHYAEDGTGKDAQEKY
ADIIPEIAEHTSQLERRAIDTERDVDSMKKAEYMGDHIGEQFNAMVSSVMKFGLFVELEN
TIEGLIHISTMKDDYYEYVENQMALVGRNTHRTFQIGLPVAVKLMRVEKDQAEVDFELLH
PEKTPTSEIKLPPRQSFNRNKGGQRNGNRNRRQNGQRSNNSNNKPFYKDKNVKRFSKNTS
HKK
NT seq 2352 nt   +upstreamnt  +downstreamnt
atggaatcaagtaaacttcaagcttcaattattaattatttggagcgacggcctacacaa
aaattcaccgcggaagaattgtttaaaggtcttagtttagaaaaagcgtccgtattcaac
gaattggtcaaagaattaacttcgttggaacggtcccataaagtagaaatcacggcggat
gacaagtttaaaattgcccgcccccaaaaccaattgctcgttcacggaacctttcgggca
aatgaccgcggctttggttttgtagcggtagaagatgatgaaattcctgatatttatatc
agtgaagaacacaccgcctacgcgcttaatttggacgaagtcgatgtaaaaatcgtgcgt
ccgtctaaaaaaggtgacgaccggggtcctgaaggaattgttaagaaaattaccaaacgg
catctcacccaagcagtgggggtgtttgaatttgctccagaccctgctcataacgtgctc
gggcacattaatctaaaagataaaaagatgtctaactacgagtttgacgtgctagaaggc
ggtattcaccccgaagacggagcggtgattactgctcaggttacccagtatccaaaaccc
aacgcccctaagttaattgcaggggttgcggaaaaaacgattggataccgcgacgatccg
ggagtagacattctggaaattgtttaccaacatgagttaccaactgaatttccggatgac
gttaaagaagaaattgctcaaattccagaccacgttactgaagccgaaaaacaaggtcgt
gtggacttaactaacgaagtagtggttaccattgacggcgatgattcaaaagactttgac
gatgcggttggcttacaaaagctagacaacggtaactaccgcttgctagttaacatcgcg
gacgtttcccactacgttaaggaaggctccccgcttgataaggaagcataccggcgcagt
accagtgtttatttgacggaccgggtaattccaatgttaccgcgaaagctttctaacggg
atttgttccttaaaccctaacgtggaacggctagcgatgacttgtgaaatggaaatcagt
ccggatggcgaagtgttaagccataaaatctacccaagtgtcattgagtctaacgcccgg
atgacttataacgacgttaacaaaatcttggaagcacgcgataagaaaaccatcgagcgt
taccaagatttagtgccaatgtttgaaatgatgggtaagttgcacaagttgctgttgaag
cgccgtaaacaacgcggagccattgaatttgacgataacgaagcacaaatcattgtcgac
gaaaatgggcacccaattgatattaaggtgcgggaacgcggaacttcagaacggatgatc
gaatccttcatgttggcggctaatgaaacggtggcagagcattactacgacgcccacgtg
ccattcttgtaccggatccatgaaaccccagatagcgaacggatgttaactttcttcgaa
ttcttatcaacctttggccacgtggttaaggggagcactaaggatcttaaaccaaagatg
ttgcaaagcgtcctcaaaaaagttgcgggaacccgtgaagaagccatgatttcggttatg
ttattgcggagcatgcgccaagcgaagtacgatgctaggtcattaggtcactttgggtta
gcagctaagtactatacccactttacttcgccaattcggcggtatcccgacttgtttgtg
caccggttgattcgccattatgcggaagatggtactggaaaagacgctcaagaaaagtac
gcggacattattccggaaattgcggaacatacttcccaacttgaacgacgggcaatcgat
acggaacgcgatgttgacagtatgaagaaggctgaatacatgggcgaccacattggtgaa
caatttaacgccatggttagttccgtaatgaagttcggactttttgttgaattggaaaac
accattgaaggcttaatccatattagtaccatgaaggatgattactacgaatacgtggaa
aatcaaatggcgctagtgggccgtaacacccaccggaccttccaaattggcttaccagtt
gcggtgaagttaatgcgggtagaaaaggaccaggctgaagtggacttcgagttgttgcat
ccggaaaagacgccaactagcgaaattaagttgccacctcgccaatcctttaaccgtaac
aagggcggtcaacggaatggtaaccgaaatcgccgacaaaatgggcaacgttctaataat
tccaacaacaaaccattctacaaagataaaaacgtcaaacgcttttctaagaatacttct
cacaaaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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