KEGG   Pseudomonas aeruginosa LES431: T223_03400
Entry
T223_03400        CDS       T02970                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pael  Pseudomonas aeruginosa LES431
Pathway
pael03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pael00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    T223_03400 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pael03021]
    T223_03400 (rpoB)
   03400 DNA repair and recombination proteins [BR:pael03400]
    T223_03400 (rpoB)
Enzymes [BR:pael01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     T223_03400 (rpoB)
Transcription machinery [BR:pael03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     T223_03400 (rpoB)
DNA repair and recombination proteins [BR:pael03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      T223_03400 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED
Other DBs
NCBI-ProteinID: AHC63346
Position
712464..716537
AA seq 1357 aa
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKGET
LNLELVPQRLRGEVASIDIKDGSGKVIVEQGRRITARHINQLEKAGVSQLEVPFDYLIGR
TIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTLKIDN
TSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVK
DSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
VVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDQ
IRKDLNEEFRIVEGATFERLRAALVGAKAEGGPALKKGTEITDDYLDGLERGQWFKLRMA
DDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLRGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatttgctggccatccagctggattcctatcgcgaattcctgcag
gctggcgcaaccaaggagcagttccgcgatatcggtctgcacgcggccttcaagtccgtt
ttcccgattatcagctattccggcaatgctgccctggaatacgtcggctaccgtctgggt
gagccggcattcgatgtcaaggagtgcgtgctgcgcggcgtgaccttcgccgtaccgctg
cgcgtgaaagttcgcctgatcatcttcgaccgcgaatcgtcgaacaaggcgatcaaggac
atcaaggaacaagaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgtgtcatcgtctcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgcgcggatc
attccttaccgcggttcctggctggacttcgagttcgatccgaaggactgcgtgttcgtc
cgtatcgaccgtcgccgcaagctgccggcctcggtactgctgcgcgcgctcggctacagc
acggaagagatcctcaacgccttctacgcgaccaacgtcttccacatcaagggcgagacc
ctgaacctggaactggtcccgcagcgcctgcgcggtgaagtcgcgagcatcgacatcaag
gatggcagcggcaaggtgatcgtggagcaggggcgtcgtatcactgcccgccacatcaac
cagctggaaaaggctggcgtgagccagctggaagtgccgttcgactacctgatcggccgt
accatcgccaaggcgatcgtgcatccggctaccggcgagatcatcgccgagtgcaacacc
gagctgaccctcgacctcctggccaaggtggccaaggcccaggtcgtgcgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcatctccgacaccctgaagatcgacaac
accagcaaccagctggaagccctggtcgagatctaccggatgatgcgtccgggcgagccg
ccgaccaaggaagctgccgagaccctgttcggcaatctgttcttcagcgccgagcgttac
gacctgtcggccgtagggcggatgaagttcaaccgccgtatcggtcgtaccgagatcgaa
ggtccgggcgtcctgagcaaggaagacatcatcgatgtgctcaagaccctcgtcgacatc
cgtaacggcaagggcatcgtcgatgacatcgaccacctgggcaaccgtcgcgtccgttgc
gtcggcgaaatggccgagaaccagttccgcgtgggcctggtgcgtgtcgagcgcgcggtc
aaggaacgcctgtccatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtggctgccgcgatcaaggagttcttcggttcgagccagctgtcgcagttcatg
gaccagaacaacccgctttccgagatcacccacaagcgccgcgtctccgcgctcggcccg
ggcggtctgacccgtgagcgtgcgggcttcgaggttcgtgacgtacacccgacccactac
ggccgcgtgtgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gcgacctacgcccgcaccaacaagtacggcttcctcgagagcccgtaccgcgtggtcaag
gacagcctggtaaccgacgagatcgtgttcctgtcggcgatcgaagaagccgaccacgtc
atcgcccaggcttcggcgaccctcaacgagaagggtcaactggtggacgagctggtggcc
gtgcgtcacctgaacgaattcaccgtgaaggcgccggaagacgtgaccctgatggatgtt
tcgccgaagcaggtcgtttccgtcgctgcctcgctgattccgttcctcgagcacgatgac
gccaaccgcgcactcatgggctcgaacatgcagcgtcaggccgtgccgaccctgcgtgcc
gacaagccgctggtgggtaccggcatggagcgcaacgtggcgcgcgactccggcgtctgc
gtcgtggctcgccgtggcggtgtgatcgactcggtcgatgccagccgtgtcgtggttcgc
gtggcggatgacgaagtcgagaccggcgaagcgggtgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgac
gtggtcgcgcgcggcgacatcctggccgacggtccgtccaccgacatgggcgaactggcc
ctgggccagaacatgcgcgtagcgttcatgccctggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgcgtggtccaggaagatcgtttcaccacgatccacatccaggaa
ctgacctgcgtcgctcgtgacaccaagctcggcccagaggaaatcaccgcggacatcccg
aacgtgggcgaggccgcgctgaacaagctggacgaagccggtatcgtctacgtcggcgcc
gaagtgcaggccggcgacatcctggtcggcaaggtcactccgaaaggcgagacccagctg
actccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgacgtgaaggac
acctccctgcgtgtgccgaccggcaccaagggtaccgtcatcgacgttcaggtcttcacc
cgcgacggcgtcgagcgcgattcccgcgcgctgtccatcgagaagatgcaactcgaccag
atccgcaaggacctgaacgaagagttccgcatcgtcgaaggcgcgaccttcgagcgtctg
cgtgccgccctggtcggtgccaaggctgaaggtggcccggcgctgaagaagggcacggag
atcaccgacgattacctcgacggtctcgagcgcggccagtggttcaagctgcgcatggcc
gacgacgccctgaacgaacagctggagaaggcccaggcctacatcagcgatcgtcgccag
ctcctggacgacaagttcgaggacaagaagcgcaagctgcagcagggcgacgacctggct
ccgggcgtgctgaagatcgtcaaggtctacctggcgatcaagcgtcgcatccagccgggc
gacaagatggccggccgtcacggtaacaagggtgtggtctcggtgatcatgccggtggaa
gacatgccgcacgatgccaacggcaccccggtcgacatcgtcctcaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagatcctcgaaacccacctgggcctcgcggccaagggg
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaaggtcgccgaactgcgtaag
ttcctgcacgagatctacaacgagatcggcggtcgcgaggaaaacctcgacgagctgggc
gacaacgagatcctcgcgctggccaagaacctgcgcggtggcgtaccgatggcgaccccg
gtgttcgatggcgccaaggaacgcgagatcaaggccatgctgaagctggccgacctgccg
gaaagcggccagatgcgtctgttcgacggccgtaccggcaaccagttcgagcgtccgacc
accgtcggctacatgtacatgctcaagctgaaccacctggtggacgacaagatgcacgcc
cgttccaccggctcgtacagcctggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgcttcggtgagatggaggtgtgggcgctggaagcctatggcgcggcgtac
accctgcaggaaatgctgacggtcaagtcggacgacgtgaacggccggaccaagatgtac
aagaacatcgtggacggcgatcaccgcatggaggcgggcatgcccgagtccttcaacgtt
ctgatcaaagagatccgttcgctcggcatcgacatcgaactggaaaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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