KEGG   Pseudomonas aeruginosa PA38182: BN889_01626
Entry
BN889_01626       CDS       T03031                                 
Symbol
ligA_2
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
paeu  Pseudomonas aeruginosa PA38182
Pathway
paeu03030  DNA replication
paeu03410  Base excision repair
paeu03420  Nucleotide excision repair
paeu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:paeu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BN889_01626 (ligA_2)
   03410 Base excision repair
    BN889_01626 (ligA_2)
   03420 Nucleotide excision repair
    BN889_01626 (ligA_2)
   03430 Mismatch repair
    BN889_01626 (ligA_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:paeu03032]
    BN889_01626 (ligA_2)
   03400 DNA repair and recombination proteins [BR:paeu03400]
    BN889_01626 (ligA_2)
Enzymes [BR:paeu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BN889_01626 (ligA_2)
DNA replication proteins [BR:paeu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BN889_01626 (ligA_2)
DNA repair and recombination proteins [BR:paeu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BN889_01626 (ligA_2)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BN889_01626 (ligA_2)
   MMR (mismatch excision repair)
    DNA ligase
     BN889_01626 (ligA_2)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BN889_01626 (ligA_2)
SSDB
Motif
Pfam: HHH_2 DNA_ligase_OB HHH_5 DNA_ligase_ZBD BRCT RUBY_RBDX DUF2116
Other DBs
NCBI-ProteinID: CDI89691
Position
1723436..1724689
AA seq 417 aa
MQVAGVTVSNATLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVP
EHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSRRAMDIDG
LGDKIVEQLVDRGLVASPADLYTLTYEQVFELEGFAELSTNNLLTAIADSRKPSLARFIF
ALGIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVI
AQLRDAEHGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIR
ADWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREFGMHWQSERKAVEGLPLA
GQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPAPARSWPRPTSWA
NT seq 1254 nt   +upstreamnt  +downstreamnt
gtgcaggtggccggcgtcacggtgtccaatgcgaccctgcacaacatggatgaagtcgcc
cgcctgggcctgcgcatcggcgatacggtggtgatccgccgtgctggcgatgtgattccg
caggtcatgcaggtggtgctcgagcgccgcccggcggatgcgcaggctatcgaggtgccc
gagcattgcccggtctgcggctcggccgtggagcggacccagttggtcaagcgcagcaag
ggcaaggagtcgatcagcgagggcgccatctatcgctgcgtcggccgcctctcctgtcag
gcgcagttgaagcaggcgatcatccatttcgtatcgcgccgggcaatggacatcgacggt
cttggcgacaagatcgtcgagcaactggtggatcgcgggctggtcgcctcgccggcggat
ctctataccctgacctatgaacaggtgttcgagctggaagggttcgccgagctgtccacc
aacaacctgctgacggccatcgccgatagccgcaagccttcgctggcgcgcttcatcttc
gctctggggattcccgacgtcggcgaggaaaccgccaagctgctggcgcgttcgctgggt
tcgctcgagcggatcggcaaggcgctcccggaagtgttgacctacctgccggacgtcggc
gccgaggtagcctacgagatccacaacttcttcgccgacgagcacaaccgccaggtgatc
gcccagttgcgcgatgccgaacatggcgtgcagttgcaggaagagggcgaggtcgccgcg
gagttcgccgcttgtgcctcgctggccggtttcatcgacaagctgaacattcccttcatc
gccgccaccggcgcggaaaagctggccagccgcttcggttcgctcgacggcatcatccgc
gccgactggctcgatctacgccaggtggagcgtctgcccgagcgagcggcgaaaagcctg
cgcgatttcttcgacgagccggccaacgtgcagcgtgccctggccatcgaggcgcagttg
cgtgagttcggcatgcattggcagagcgagcgcaaggcggtcgaaggcctgcctctggcc
gggcagacctgggtgctgaccggcaccctggaggcgatgagccgggacgtggccaaggac
aagctggaagggctcggcgccaaggtggccggctcggtgtcggccaagacccactgcgtg
gtcgcgggcccggcgccggctcgaagctggccaaggccaacgagctgggcgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (26)   

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