KEGG   Pseudoalteromonas agarivorans: PAGA_a1521
Entry
PAGA_a1521        CDS       T06137                                 
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
paga  Pseudoalteromonas agarivorans
Pathway
paga03030  DNA replication
paga03430  Mismatch repair
paga03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:paga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PAGA_a1521 (dnaX)
   03430 Mismatch repair
    PAGA_a1521 (dnaX)
   03440 Homologous recombination
    PAGA_a1521 (dnaX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:paga03032]
    PAGA_a1521 (dnaX)
   03400 DNA repair and recombination proteins [BR:paga03400]
    PAGA_a1521 (dnaX)
Enzymes [BR:paga01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PAGA_a1521 (dnaX)
DNA replication proteins [BR:paga03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PAGA_a1521 (dnaX)
DNA repair and recombination proteins [BR:paga03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PAGA_a1521 (dnaX)
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_tau_5 DNA_pol3_gamma3 AAA AAA_22 RuvB_N AAA_14 AAA_5 AAA_18 DNA_pol3_delta AAA_assoc_2 AAA_30 AAA_16 AAA_19 TIP49 AAA_7 AAA_2 PIF1 nSTAND3 Rad17 TsaE AAA_24 Mg_chelatase T2SSE
Other DBs
NCBI-ProteinID: ATC81918
UniProt: A0A290RM83
Position
I:1434581..1437049
AA seq 822 aa
MSYQVLARKWRPQTFHELVGQSHVKQALVNALTQNRLHHAYLFTGTRGVGKTTIARIFAK
SLNCDEGISASPCGQCSSCTDIEAGRYIDLLEIDAASRTKVEDTREILDNVQYAPTRGRY
KVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLNALSQ
SEIKTQLEHVLTQEELNFDKDALSIIAKAADGSMRDALSLTDQAIAQTNGDINNQAVQAM
LGLMDTHYSQSLLAALLAQDGGALMDEIAQVASRNPNYIALLDDLIALTHLIQLTQLVPQ
AAQLDDKNADYISHVAQHTQAQQIQVYYQLLLNGKKDLQWAPEPRLGFEMIMLRLLAFES
AGTMSAQSLPEPSDTTSAAMPAPTSSKGRADALRDILNKNKTPSQDETPALQVMVEKSQN
QSTAQSQTIDEPVEQPPTEQLTRSPSEQHSNSASAAAQSPQNDIPSPVQQSEHIAKSDDA
AERQSEDDAYLQHSNMEQSLAAQFDDVMSSAVDQGYNPAPVAQHTQPVPENADAKDSSVR
EQEAQAQSAIARILRDRNISGAGRLSGGSVNTPEQAQTPKTPAQATPNSEAKPHNTSPQA
SESQNDSPPWHDNAQGDSEKKPTLPVTGSQTPAEPVTQSQPARKVDFKEKHQTITENLAP
ELLEQINPQKKPEVIEQEPAIPVPDDFQSPISEIKFAHQQDEWAYLIKRMGLGGRMRQFA
LHSIFTKQGDSLHIDVDESQKHLDTPMLRQKLDAALSSIYGHNVSLSINFAKGVIDSPYL
IQQKIDAGRHQQAIDVITSDENIVQFQQLFSAEIDENSIQAL
NT seq 2469 nt   +upstreamnt  +downstreamnt
atgagttatcaggttctagcgagaaaatggcgtccgcaaacctttcatgaattggttggc
cagtctcatgtaaagcaagcgcttgttaatgcgctaacgcaaaatagactgcatcacgct
tatttattcactggaacccgtggtgtgggtaaaacgaccattgcgcgtatttttgctaaa
agcttaaattgtgatgagggtatatcggcatctccttgcgggcaatgtagcagttgtact
gatatagaagcagggcgatacattgacttacttgaaatcgatgctgcttctcgcaccaaa
gtagaagatactcgtgaaattcttgataacgttcaatatgcacccacgcgtggacgttac
aaagtatacctaatagatgaagtacacatgctctctaagcatagctttaacgcgttatta
aaaacgttagaagagccgccagagcatgtgaaatttttactagcaaccaccgatccgcaa
aagctacctgttaccatcttatcgcgctgtttacagtttaacttaaatgcactttcgcaa
agcgaaattaaaactcagcttgagcatgtccttactcaagaggagttaaactttgataaa
gatgcgctaagtattattgcaaaagccgccgatggcagtatgcgtgacgcgttgagctta
acagatcaagctattgcgcaaaccaacggcgacataaataatcaagccgtacaagctatg
cttggtttaatggacacacattacagccaaagtttgcttgctgctttgttagcacaagat
ggtggcgcactgatggacgaaatagcccaagtagcgagccgtaatcctaactatattgca
ctacttgatgatttaattgcattaactcaccttattcaattaactcagcttgtcccgcaa
gcagcgcaacttgatgataaaaacgccgattatattagccatgttgcacagcacacccag
gctcaacaaatacaggtttattaccagttactattaaacggtaaaaaagacttacaatgg
gcgccagagcctcgtttaggctttgaaatgataatgctgcgtttattagcatttgagtct
gcaggtacaatgtctgctcaatcgcttcctgagcctagtgacacaacgagtgcagcaatg
cctgcgcctaccagtagtaaaggccgtgccgatgcgctgcgtgatatattaaataaaaat
aaaacaccatcgcaagacgaaacccctgctctgcaagtaatggttgagaaaagccaaaac
caaagcactgcgcaaagccaaacaattgatgaaccagtagagcaaccgcccacagagcag
ctaacacgctcgccaagtgagcaacacagcaacagcgcatcagctgcggctcaaagcccg
caaaacgatataccgagccctgtgcagcaaagtgagcacattgctaagagtgacgatgct
gctgagcgccaaagtgaagacgatgcttatctgcaacacagtaatatggagcaaagctta
gctgcacaatttgatgatgttatgagcagtgcggtagatcaaggttataaccctgcacct
gtagcgcaacatacacaacccgtgcctgaaaacgccgatgctaaagatagcagtgtgcgt
gaacaagaagctcaagcacaatcagcaattgcgcgaattttacgggatagaaatatatcg
ggggcaggcagactttctggggggagtgtaaatacccctgagcaagcgcaaacaccaaaa
acacctgcccaagctacgcctaacagcgaagcaaagccacataatacaagcccgcaagcg
agtgagtcacaaaacgattcaccgccatggcatgacaatgcgcaaggcgatagcgaaaaa
aagccaacgctcccagtaacagggagccaaacgccagctgagccagtaacgcaaagccag
ccagcgcgtaaggttgattttaaagaaaagcatcaaacaattactgaaaacttagcgcct
gagctgcttgagcaaattaacccgcaaaaaaagcctgaggtaatagagcaagagcccgct
ataccggttcctgatgattttcaaagcccaattagcgagattaaatttgcgcatcagcaa
gatgagtgggcttatttaattaagcgtatggggcttggtgggcgaatgcgccaatttgca
ttacactcgatttttactaagcaaggcgacagtttacatattgacgtggatgaatcgcaa
aaacacttagatacgcccatgcttaggcaaaagctcgatgcggcgttatcaagtatatac
gggcataacgtatcgctgagtattaactttgcaaaaggggtgattgactcgccttattta
attcagcaaaaaatagatgcagggcgtcatcagcaagcaatagatgtgatcacatctgat
gaaaacatagtacaatttcagcagctatttagcgccgaaattgacgaaaacagtattcag
gcattgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (24)   
   Pfam (24)   
All databases (36)   

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