KEGG   Pseudoalteromonas agarivorans: PAGA_a3566
Entry
PAGA_a3566        CDS       T06137                                 
Symbol
hfq
Name
(GenBank) host factor-I protein
  KO
K03666  host factor-I protein
Organism
paga  Pseudoalteromonas agarivorans
Pathway
paga02024  Quorum sensing
paga03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:paga00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAGA_a3566 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PAGA_a3566 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paga03019]
    PAGA_a3566 (hfq)
   03036 Chromosome and associated proteins [BR:paga03036]
    PAGA_a3566 (hfq)
Messenger RNA biogenesis [BR:paga03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PAGA_a3566 (hfq)
Chromosome and associated proteins [BR:paga03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PAGA_a3566 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ATC83679
UniProt: A0A290RUI8
Position
I:complement(3355767..3356030)
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIFLVNGIKLQGKIQSFDQFVILLENTVNQMVYKHAIS
TVVPARAVNFQGVQGSDDTEEQEPGNI
NT seq 264 nt   +upstreamnt  +downstreamnt
atggcaaaaggccaatcgttacaagacccatttttgaatgcactacgtcgtgagcgcatt
ccagtatcaatctttttggtaaatggcataaaattacaaggtaaaattcagtcatttgac
caatttgttattttacttgaaaacactgtaaaccaaatggtgtataaacacgcaatttca
acagttgtacctgctcgtgcagtcaacttccaaggtgttcaagggagcgatgacactgaa
gagcaagaaccaggaaatatttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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