KEGG   Planktothrix agardhii: NIES204_18600
Entry
NIES204_18600     CDS       T05658                                 
Symbol
rpoA_2
Name
(GenBank) RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
pagh  Planktothrix agardhii
Pathway
pagh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pagh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NIES204_18600 (rpoA_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pagh03021]
    NIES204_18600 (rpoA_2)
   03400 DNA repair and recombination proteins [BR:pagh03400]
    NIES204_18600 (rpoA_2)
Enzymes [BR:pagh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NIES204_18600 (rpoA_2)
Transcription machinery [BR:pagh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NIES204_18600 (rpoA_2)
DNA repair and recombination proteins [BR:pagh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NIES204_18600 (rpoA_2)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L HHH_5 HHH_2
Other DBs
NCBI-ProteinID: BBD54566
UniProt: A0A2Z6CDS1
Position
2166980..2167957
AA seq 325 aa
MEKGGPSVAQFKIECIESNTDTDRSQYGKFVLEPLERGQGTTVGNALRRVLLSNLEGTAI
TSARFANVNHEFATIQGVREDVLEILLNLKEVVLKSYTHQKQIGRLEVQGPATVTAGHFK
LPSEVEVVDKNQYIATLSPGSTLEMEIQVDKGTGYHAVERNRDEALAVDFLQIDAVFMPV
RKVNYTVEDARVGGTVEKDRLIIEIWTNGSLTPQEAISQSATKLVDLFTPLKDITLESIK
SDQNDDVDPTSQIPIEELQLSVRAYNCLKRAQINSVADLRDYTQEDLLEIKNFGQKSAEE
VIEALQKRLGITLPQERAPKSVVSS
NT seq 978 nt   +upstreamnt  +downstreamnt
atggagaagggaggtccatcggtggcgcagtttaagattgagtgtattgaatcgaacact
gatacagaccggagtcagtacggtaaatttgtcttagaaccgttagaacggggccaaggg
acaacggttggtaatgctctaagacgggttttactatcgaacttagaaggaacggcgatt
acatcggcacggtttgccaatgttaatcatgagtttgcaacaattcaaggggttcgggaa
gatgttttagagattttgctgaacctgaaagaagttgtactcaagagctatacccaccaa
aaacaaatcggtcgcttagaagttcaaggcccagcgacggtaacggcgggtcattttaag
ttgccttcagaagttgaggttgtagacaaaaaccaatatatcgctaccctatccccggga
tcaaccttggaaatggaaatccaagttgataagggtactgggtatcacgccgttgagcgt
aatcgggacgaggcactggctgtagattttctccaaattgatgctgtgttcatgcctgta
cggaaagtgaattacaccgtcgaggatgcacgggtgggtggaactgtagaaaaagaccgc
ctgatcattgagatttggacaaatgggagtttaaccccccaagaagccatcagccaatcc
gcgaccaaactggtggacttgttcactccgttgaaagacatcaccttggaatcaatcaaa
agtgaccagaatgatgatgttgatccgaccagtcaaatcccgattgaagaactacagtta
tcagttcgggcttataactgtctcaaacgcgctcaaatcaactcggtcgcagacttacgg
gattatactcaagaagacctattagaaattaaaaacttcggtcagaagtctgcggaggag
gtaatcgaggcgttacaaaaacgcttagggattacactgcctcaagaaagggcacctaaa
tcagtagttagtagttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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