KEGG   Pseudomonas alcaligenes: A0T30_02415
Entry
A0T30_02415       CDS       T04318                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
palc  Pseudomonas alcaligenes
Pathway
palc03030  DNA replication
palc03410  Base excision repair
palc03420  Nucleotide excision repair
palc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:palc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A0T30_02415
   03410 Base excision repair
    A0T30_02415
   03420 Nucleotide excision repair
    A0T30_02415
   03440 Homologous recombination
    A0T30_02415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:palc03032]
    A0T30_02415
   03400 DNA repair and recombination proteins [BR:palc03400]
    A0T30_02415
Enzymes [BR:palc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     A0T30_02415
DNA replication proteins [BR:palc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A0T30_02415
DNA repair and recombination proteins [BR:palc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     A0T30_02415
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A0T30_02415
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc
Other DBs
NCBI-ProteinID: AMR65277
Position
512140..514926
AA seq 928 aa
MSKAPLVLVDGSSYLYRAFHALPPLANSKGLQTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGPTFRDEMFEHYKAHRPPMPEELRGQVEPLHAAVRALGYPLLCVEGVEADDVIGTLAR
QTAALGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVREKFGVGPELIIDYLALM
GDKVDNIPGVPGVGEKTALGLLVGVGGGLDVLYASLDKVPELPIRGAKTLPAKLAEHKDM
AFLSYQLATIKTDVELDVGVDDLHPGEPDRAALVTLYTELEFKGWLDELQRQQPKARPAT
VAAPSGGLFDAPEPAAVAAQPASESRYETVLEQARFDAWLKKLEAAELIAFDTETTSLDP
QQAQVVGVSFAVEAGEAAYVPLAHSYMGVPAQLDRDAVLRALKPILEDPAKAKVGQHAKY
DMNVLAHATTPIEMQGVAFDTMLESYVLDSTATRHDMDSLAMKYLEHSTIRFEDIAGKGA
KQLTFDQIALEQAGPYAAEDADVTLRLHQCLWARLQATPSLAKVLKDIEMPLVPVLARIE
RNGALVDAKLLGQQSLELGERLVALERQAFELAGQEFNLGSPKQLGAILYDKLGLPVLSK
TATGQPSTAENVLAELAEQDHALPKLLMEYRSLSKLKSTYTDKLPEQINPRTGRIHTSYH
QAVAATGRLSSTDPNLQNIPIRTAEGRRIRQAFVAPKGYKLMSADYSQIELRIMAHLAKD
EGLLDAFRHDRDVHRATAAEVFGVPLEQVSSDQRRSAKAINFGLIYGMSAFGLAKQIGVD
RKQAQAYIDTYFARYPGVLAYMERTREQATQQGYVETLFGRRLYLPDIHAKNPALRKGAE
RTAINAPMQGTAADIMKRAMIAVDQWLPQSGLDAKVILQVHDELVLEIREDQIEALRAGL
LPLMSGAAELDVPLVVEAGVGNNWDEAH
NT seq 2787 nt   +upstreamnt  +downstreamnt
atgtccaaggcccctctcgttctggtcgacggttcctcctacctgtaccgcgccttccac
gccctgccgccactggccaactccaaaggcctgcagaccggtgcggtgaagggcgtgctg
aacatgctcaagagcctgcgcaagcagtacccggacagccccttcgccgtggtgttcgac
gccaagggcccgaccttccgcgacgagatgttcgagcactacaaggcgcaccgcccgccg
atgcccgaggagctgcgcggccaggtcgagccgctgcacgccgccgtgcgcgccctcggt
tacccgctgctgtgcgtggaaggcgtggaggccgacgacgtgatcggcactctggcccgg
cagaccgccgcgctcggccgcgacgtggtgatctccaccggcgacaaggacatggcccag
ctggtctgcccgcacgtcaccctggtcaacaccatgaccggcagcgtctacgacatcgag
ggcgtgcgcgagaagttcggcgtcggtcccgagctgatcatcgactacctggccctgatg
ggcgacaaggtcgacaacatccccggcgtgccgggggtcggcgagaagaccgcgctgggc
ctgctggtcggcgtcggcggcggcctcgacgtgctctacgccagcctggacaaggtgccc
gagctgccgatccgcggcgccaagaccctgccggccaagctcgccgagcacaaggacatg
gccttcctgtcctaccagctggcgaccatcaagaccgatgtcgagctggacgttggcgtc
gacgacctgcaccccggcgagccggaccgtgcggcgctggtcaccctgtataccgaactg
gagttcaagggctggctcgacgagctgcagcgccagcagcccaaggcccgtccggcgacg
gtggcagcgccgagcggtggcctgttcgatgcgcccgagcccgctgccgttgccgcgcaa
ccggccagcgagtcgcgctacgagacggtgctggagcaggcgcgcttcgacgcctggctg
aagaagctggaggccgccgagctgatcgccttcgacaccgagaccaccagcctcgacccg
cagcaggcccaggtggtcggcgtgtccttcgcggtggaggctggcgaggccgcttatgtg
ccgctggcccactcctacatgggcgtgccggcgcagctggaccgcgacgcggtgctccgt
gcgctcaagccgatcctggaagacccggccaaggccaaggtcggccagcacgccaagtac
gacatgaacgtactggcccacgcgaccacgccgatcgagatgcagggcgtggccttcgac
accatgctggaatcctatgtgctggattccacggcgacccgccacgacatggacagcctg
gccatgaagtacctggagcacagcaccatccgcttcgaggacattgccggcaagggcgcc
aagcagctgacgttcgaccagatcgccctggagcaggccggcccctacgccgccgaagac
gccgacgtgaccctgcgcctgcaccagtgcctgtgggccaggctgcaggccacgccgagc
ctggccaaggtgctcaaggacatcgagatgccgctggtgccggtgctggcgcgtatcgag
cgcaacggcgcgctggtcgatgccaagctgctcggccagcagagcctggagctcggcgag
cggctggtggcgctggagcgccaggccttcgagctggccggccaggagttcaacctcggc
tcgcccaagcagcttggcgccatcctctacgacaagctcggcctgccggtgctgagcaag
accgccaccggccagccgtccaccgccgagaacgtgctggccgaactggccgagcaggac
catgcgctgcccaagctgctgatggaataccgcagcctgagcaagctgaagagcacctac
accgacaagctgccggagcagatcaacccgcgcactgggcgcatccacaccagctaccac
caggcggtggcagccaccgggcggttgtcgtcgaccgacccgaacctgcagaacatcccg
atccgcaccgccgagggccggcgtatccgccaggccttcgtcgcgccgaagggctacaag
ctgatgtcggcggactactcgcagatcgagctgcgcatcatggcgcacctggccaaggac
gagggcctgctggacgccttccgccacgaccgcgacgtgcaccgcgccaccgccgccgag
gtgttcggcgtgccgctggagcaggtcagctccgaccagcgccgtagcgccaaggcgatc
aacttcggcctgatctacggcatgagcgccttcggcctggccaagcagatcggcgtcgac
cgcaagcaggcgcaggcctatatcgatacctacttcgccagatacccaggtgtattggcc
tatatggagcgcactcgcgagcaggcgacccagcagggctatgtcgagaccctgttcggc
cgccgcctgtacctgccggacatccacgcgaagaacccggccctgcgcaagggcgccgag
cgcacggcgatcaacgcgccgatgcagggcaccgcggcggacatcatgaagcgcgcgatg
atcgccgtggaccagtggctgccgcagtctgggctggatgcgaaagtcatactgcaggta
cacgacgaactggtgctggagattcgcgaggatcagatcgaggcgctgcgcgccggcctg
ctgccgctgatgagcggcgccgccgagctggatgtgccgctggtggttgaggccggggtg
ggcaacaactgggacgaggcgcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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