KEGG   Pantoea ananatis LMG 20103: PANA_0745Help
Entry
PANA_0745         CDS       T01195                                 

Gene name
lpdA
Definition
(GenBank) LpdA
  KO
K00382  dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Organism
pam  Pantoea ananatis LMG 20103
Pathway
pam00010  Glycolysis / Gluconeogenesis
pam00020  Citrate cycle (TCA cycle)
pam00260  Glycine, serine and threonine metabolism
pam00280  Valine, leucine and isoleucine degradation
pam00310  Lysine degradation
pam00380  Tryptophan metabolism
pam00620  Pyruvate metabolism
pam00630  Glyoxylate and dicarboxylate metabolism
pam00640  Propanoate metabolism
pam01100  Metabolic pathways
pam01110  Biosynthesis of secondary metabolites
pam01120  Microbial metabolism in diverse environments
pam01130  Biosynthesis of antibiotics
pam01200  Carbon metabolism
Module
pam_M00009  Citrate cycle (TCA cycle, Krebs cycle)
pam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
pam_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:pam00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    PANA_0745 (lpdA)
   00020 Citrate cycle (TCA cycle)
    PANA_0745 (lpdA)
   00620 Pyruvate metabolism
    PANA_0745 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    PANA_0745 (lpdA)
   00640 Propanoate metabolism
    PANA_0745 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    PANA_0745 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    PANA_0745 (lpdA)
   00310 Lysine degradation
    PANA_0745 (lpdA)
   00380 Tryptophan metabolism
    PANA_0745 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pam04147]
    PANA_0745 (lpdA)
Enzymes [BR:pam01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     PANA_0745 (lpdA)
Exosome [BR:pam04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   PANA_0745 (lpdA)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 GIDA FAD_oxidored AlaDh_PNT_C FAD_binding_2 NAD_binding_8 HI0933_like Thi4 FAD_binding_3 3HCDH_N Lycopene_cycl DAO
Motif
Other DBs
NCBI-ProteinID: ADD75912
UniProt: D4GK83
Position
871368..872795
Genome map
AA seq 475 aa AA seqDB search
MMSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVLVERYSTLGGVCLNVGCIPSKALLHV
AKVIEEAKALEEHGIVFGQPQTDINKIRSWKEKVINQLTGGLSGMAKGRKVKVVNGLGKF
TGANTLVVEGEGGATTINFDNAIIAAGSRPIELPFIPHEDPRVWDSTDALELKEVPKRLL
VMGGGIIGLEMATVYHALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKKFNLMLETKVT
AVEAKDDGIYVSMEGKKAPGEAQRYDAVLVAIGRVPNGKGMDADKAGVEVDDRGFIRVDK
QMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVISGLKHYFDPKVIPSIAYTEPEVAW
VGLTEKEAKEKGISYETATFPWAASGRAIASDCADGITKLIFDKETHRVIGGAIVGTNGG
ELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEIFEGSITDLPNAKAKKK
NT seq 1428 nt NT seq  +upstreamnt  +downstreamnt
atgatgagtacagagattaaaactcaggtcgtggtacttggggcaggtcctgcaggttac
tctgcagcttttcgttgcgctgacttaggtctggaaaccgtactggttgagcgctacagc
accctcggcggtgtctgtcttaacgtaggctgtatcccgtctaaagcgctactgcacgtt
gccaaagtgattgaagaagcgaaagcgctggaagaacacggcattgtgtttggtcagccg
caaacggatatcaacaaaatccgcagctggaaagagaaggtgattaaccagctgactggc
ggtctgtcaggcatggcaaaaggtcgtaaagtcaaggttgttaacggcctgggcaaattt
accggtgcgaatacgctggtggttgaaggtgaaggtggtgcaaccaccattaacttcgac
aacgccattatcgctgcgggctcacgcccaatcgagctgccgttcattcctcatgaagat
cctcgcgtgtgggattcaaccgatgcgctggaactgaaagaagtgcctaaacgtctgctg
gtcatgggcggcggtattatcggtctggaaatggcgacggtttaccatgcgctgggttca
gagatcgacgtggttgaaatgttcgaccaggttatcccggctgccgataaagacgtggtg
aaagtcttcaccaaacgtatcagcaagaaattcaacctgatgctggaaactaaggtgacc
gccgttgaagcaaaagacgacggtatctatgtgtcaatggaaggtaaaaaagcgccaggc
gaagcccagcgttatgatgcggttctggtggcaattggtcgcgtgccaaacggtaagggc
atggatgcagataaagccggcgttgaggttgacgaccgtggctttatccgcgttgacaaa
caaatgcgcaccaacgtgccgcacatctacgctatcggcgatatcgtcgggcagccgatg
ctggcgcataaaggcgtgcatgaaggccacgttgcggcagaagtcatttcaggtctgaag
cactacttcgatccgaaagtgattccgtccattgcctatactgaaccagaagttgcctgg
gtaggtctgaccgagaaagaagcgaaagagaaaggcatcagctacgaaactgccacattc
ccgtgggctgcatccggccgtgctattgcttctgactgcgcagacggtatcaccaaactg
attttcgacaaagaaacccatcgcgttatcggtggcgccatcgttggtactaacggcggt
gagctgctgggcgaaattggtctggccattgaaatgggctgtgatgcagaagacatcgca
ttgaccatccatgcgcacccgaccctgcatgagtcagtaggcctggccgctgaaatcttt
gaaggcagcatcaccgatctgcctaacgcgaaagcgaaaaagaaataa

KEGG   Pantoea ananatis LMG 20103: PANA_1175Help
Entry
PANA_1175         CDS       T01195                                 

Gene name
sucA
Definition
(GenBank) SucA
  KO
K00164  2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
Organism
pam  Pantoea ananatis LMG 20103
Pathway
pam00020  Citrate cycle (TCA cycle)
pam01100  Metabolic pathways
pam01110  Biosynthesis of secondary metabolites
pam01120  Microbial metabolism in diverse environments
pam01130  Biosynthesis of antibiotics
pam01200  Carbon metabolism
Module
pam_M00009  Citrate cycle (TCA cycle, Krebs cycle)
pam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:pam00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00020 Citrate cycle (TCA cycle)
    PANA_1175 (sucA)
Enzymes [BR:pam01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.4  With a disulfide as acceptor
    1.2.4.2  oxoglutarate dehydrogenase (succinyl-transferring)
     PANA_1175 (sucA)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Transket_pyr OxoGdeHyase_C E1_dh 2-oxogl_dehyd_N PFOR_II
Motif
Other DBs
NCBI-ProteinID: ADD76342
UniProt: D4GMK7
Position
1334861..1337668
Genome map
AA seq 935 aa AA seqDB search
MQNSAMKPWLDSSWLAGANQSYIEQLYEDFLTDPDSVDAVWRSMFQQLPGTGVKPEQFHS
ATREYFRRLAKDASRYTSSVTDPATNSKQVKVLQLINAFRFRGHQEANLDPLGLWKQDRV
ADLDPAFHDLTDADFQESFNVGSFAIGKETMKLADLFDALKQTYCGSIGAEYMHINNTEE
KRWIQQRIESGASQTSFSGEEKKGFLKELTAAEGLEKYLGAKFPGAKRFSLEGGDALVPM
LREMIRHAGKSGTREVVLGMAHRGRLNVLINVLGKKPQDLFDEFSGKHKEHLGTGDVKYH
MGFSSDIETEGGLVHLALAFNPSHLEIVSPVVMGSVRARLDRLAEPVSNKVLPITIHGDA
AVIGQGVVQETLNMSQARGYEVGGTVRIVINNQVGFTTSNPKDARSTPYCTDIGKMVLAP
IFHVNADDPEAVAFVTRLALDYRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIK
KHPTPRKIYADRLEGEGVASQEDATEMVNLYRDALDAGECVVPEWRPMSLHSFTWSPYLN
HEWDEPYPAQVDMKRLKELALRISQVPEQIEVQSRVAKIYNDRKLMAEGEKAFDWGGAEN
LAYATLVDEGIPVRLSGEDSGRGTFFHRHAVVHNQANGSTYTPLHHIHNSQGEFKVWDSV
LSEEAVLAFEYGYATAEPRVLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLL
PHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSP
KSLLRHPLAISSLDELANGSFQPAIGEIDDLDPQGVKRVVLCSGKVYYDLLEQRRKDEKT
DVAIVRIEQLYPFPHQAVQEALKAYSHVQDFVWCQEEPLNQGAWYCSQHHFRDVVPFGAT
LRYAGRPASASPAVGYMSVHQQQQQDLVNDALNVN
NT seq 2808 nt NT seq  +upstreamnt  +downstreamnt
atgcagaacagcgcgatgaagccctggctggactcctcctggctggccggcgcgaatcag
tcttacatagagcaactctatgaggatttcctgaccgatcctgactctgtggatgcagtg
tggcgctcgatgttccaacagttaccaggcacgggagtgaaacctgagcagttccactcc
gcaactcgcgaatatttccgtcgcctggcgaaagacgcatctcgttacacctcctcagtt
accgatccggcaaccaactccaaacaagtgaaagtgctgcagctgatcaacgcgtttcgt
ttccgcggacatcaggaagcaaatctcgatccgcttggcctgtggaaacaggaccgcgtt
gccgatctcgatcctgcctttcacgatctgaccgacgccgattttcaggaaagctttaac
gtaggttcttttgccattggcaaagaaaccatgaagctggccgatctgttcgacgcgctg
aagcagacctactgtggctcgattggtgcagagtatatgcacatcaataacaccgaagag
aaacgctggatccagcagcgtatcgaatccggtgcgagccagacgtcattcagtggcgaa
gagaaaaaaggtttcctgaaagagctgaccgcggcagaagggctggaaaaatatctgggc
gcgaaattcccgggtgcaaaacgtttctcgctggaaggcggtgatgcgctggtgccgatg
ctgcgcgagatgattcgtcatgcgggcaaaagcggcacacgtgaagtggtactggggatg
gcgcaccgtggccgtcttaacgtactgattaacgtactgggtaaaaagccacaggatctg
ttcgacgaattctccggtaaacacaaagagcatctgggcacaggtgatgtgaagtatcac
atgggcttctcttcggatatcgaaaccgaaggtggtctggtgcatctggcgctggcgttt
aacccgtctcacctggaaattgtcagcccggtggtcatgggatcggtacgtgcacgtctc
gatcgtctggccgaaccggtcagcaataaagtgctgcctatcaccattcacggtgatgcg
gcggtgattggtcagggcgtggttcaggaaaccctgaacatgtctcaggcgcgcggctac
gaagtgggcggcacggtacgtatcgtcattaacaaccaggttggttttaccacctccaac
ccgaaagatgcgcgttcaaccccgtactgtactgacatcggcaagatggtgctggcaccg
attttccacgtcaatgctgacgatccggaagcggtagcctttgttacccgcctggcgctg
gactatcgcaataccttcaaacgcgatgtgtttatcgatctggtgtgctatcgccgtcat
ggtcacaacgaggcggatgagccaagtgctacccagccgttgatgtaccagaaaatcaaa
aagcatccgacgccgcgtaaaatttacgccgatcgtctggaaggcgaaggtgtcgcgtcg
caggaagatgccaccgagatggtgaacctgtaccgcgatgcgctcgatgcgggcgaatgc
gtggtgccggaatggcgtccgatgagcctgcactccttcacgtggtcgccttatctgaac
cacgaatgggatgagccttatccggcacaggttgacatgaaacgcctgaaggaactggca
ttgcgtatcagccaggtccctgagcagattgaagtgcaatcgcgcgtggccaagatctat
aacgatcgcaagctgatggccgaaggcgagaaagcgttcgactggggcggtgccgagaat
ctggcgtacgccacgctggtggatgaaggtattccggttcgcctctcgggtgaagactcc
ggtcgtggaaccttcttccatcgccatgcggtcgtgcacaaccaggctaacggttcaacc
tatacgccgctgcaccatattcataacagccagggcgagttcaaagtctgggattctgtg
ctgtctgaagaagccgtgctggcgtttgaatacggttacgccacggctgagccgcgcgtg
ctgaccatctgggaagcgcagtttggtgactttgccaacggtgctcaggtggtgattgac
cagttcatcagctctggcgaacagaagtggggccgtatgtgtggcctggtgatgttgctg
ccgcatggctacgaaggtcagggcccggaacactcctctgcccgtctggaacgctatctg
caactttgcgccgagcagaacatgcaggtttgcgtcccgtcgacgccggctcaggtgtat
cacatgctgcgccgtcaggcgctgcgcgggatgcgccgtccgctggtggtgatgtcgccg
aagtcgctgttacgccatccgctggcgatctcgtcgctggatgaactggcaaacggcagt
ttccagccagccattggtgagatcgacgatctggatccgcagggcgtgaaacgcgtcgtg
ctgtgctccggtaaggtttactacgatctgctggaacagcgtcgtaaagacgagaaaacc
gatgttgccatcgtgcgcatcgaacagctttacccgttcccgcatcaggcggtacaggaa
gcattgaaagcctattctcacgtacaggactttgtctggtgccaggaagagcctctgaac
cagggcgcctggtactgtagccagcatcatttccgtgatgtcgtgccgtttggtgccacc
ctgcgttatgcaggtcgcccggcatcggcttctccggccgtgggttatatgtccgtacac
caacaacagcagcaagacctggttaatgacgcactgaacgtcaattaa

KEGG   Pantoea ananatis LMG 20103: PANA_1176Help
Entry
PANA_1176         CDS       T01195                                 

Gene name
sucB
Definition
(GenBank) SucB
  KO
K00658  2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
Organism
pam  Pantoea ananatis LMG 20103
Pathway
pam00020  Citrate cycle (TCA cycle)
pam00310  Lysine degradation
pam00380  Tryptophan metabolism
pam01100  Metabolic pathways
pam01110  Biosynthesis of secondary metabolites
pam01120  Microbial metabolism in diverse environments
pam01130  Biosynthesis of antibiotics
pam01200  Carbon metabolism
Module
pam_M00009  Citrate cycle (TCA cycle, Krebs cycle)
pam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:pam00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00020 Citrate cycle (TCA cycle)
    PANA_1176 (sucB)
  09105 Amino acid metabolism
   00310 Lysine degradation
    PANA_1176 (sucB)
   00380 Tryptophan metabolism
    PANA_1176 (sucB)
Enzymes [BR:pam01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.1  Transferring groups other than aminoacyl groups
    2.3.1.61  dihydrolipoyllysine-residue succinyltransferase
     PANA_1176 (sucB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: 2-oxoacid_dh Biotin_lipoyl E3_binding Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID: ADD76343
UniProt: D4GMK8
Position
1337684..1338907
Genome map
AA seq 407 aa AA seqDB search
MSSVDILVPDLPESVADATVATWHKKPGDAVSRDEVIVEIETDKVVLEVPASADGVLEAV
LEDEGATVTSRQILGRLKEGNSAGKESSAKAESNDTTPAQRQTASLEEESSDALSPAIRR
LIAEHNLDAAQIKGTGVGGRLTREDVEKHLANKPQAEKAAAPAAGAATAQQPVANRSEKR
VPMTRLRKRVAERLLEAKNSTAMLTTFNEINMKPIMDLRKQYGDAFEKRHGVRLGFMSFY
IKAVVEALKRYPEVNASIDGEDVVYHNYFDVSIAVSTPRGLVTPVLRDVDALSMADIEKK
IKELAVKGRDGKLTVDDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAV
NGQVVILPMMYLALSYDHRLIDGRESVGYLVAVKEMLEDPARLLLDV
NT seq 1224 nt NT seq  +upstreamnt  +downstreamnt
atgagtagcgtagatattctcgttcccgacctgcctgaatcggttgcagatgccacagta
gcaacctggcacaagaaaccaggcgatgcagtcagccgcgatgaagtcatcgtcgaaatt
gaaactgacaaagtcgtgctggaagtgccggcatctgccgatggcgtgctggaagccgtg
ctggaagacgaaggggcaaccgttacgtcccgccagatcctgggtcgcctgaaagaaggc
aacagtgcgggtaaagaaagcagtgccaaagcggaaagcaatgacaccacgccagcccag
cgtcagacagcgtcgcttgaagaagagagcagcgatgcgctcagcccggcgatccgtcgc
ctgattgcggagcataatcttgacgctgcgcagatcaaaggcaccggcgtgggcggacgt
ttaacgcgtgaagacgttgaaaaacatctggcgaacaaaccgcaggctgagaaagccgcc
gcgccagcggcgggtgcagcaacggctcagcagcctgttgccaaccgcagcgaaaaacgt
gttccgatgacgcgtttacgtaagcgcgtcgcggagcgtctgctggaagccaagaacagc
accgccatgttgacgaccttcaacgaaatcaacatgaagccgattatggatctgcgtaag
cagtacggcgatgcgttcgagaagcgtcatggtgtgcgtctgggctttatgtctttctac
atcaaggccgtggtcgaagcgctgaagcgttatccagaagtcaacgcctctatcgatggc
gaagacgtggtgtaccacaactatttcgatgtgagtattgccgtctctacgccacgcgga
ctggtgacgcctgtcctgcgtgacgttgatgcgctgagcatggctgacatcgagaagaaa
attaaagaactggcagtgaaaggccgtgacggcaagctgacggttgacgatctgacgggc
ggtaactttaccatcaccaacggtggtgtgttcggttcgctgatgtctacgccaatcatc
aacccgccacagagcgcgattctgggtatgcacgccattaaagatcgtcctatggcggtc
aatggtcaggttgtgatcctgccaatgatgtacctggctctctcctacgatcaccgttta
atcgatggtcgtgaatctgtcggctatctggtcgcagtgaaagagatgctggaagatccg
gcgcgtctgctgctggatgtctga

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