KEGG   Pseudomonas amygdali: BKM19_002535
Entry
BKM19_002535      CDS       T05354                                 
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
pamg  Pseudomonas amygdali
Pathway
pamg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pamg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BKM19_002535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pamg03021]
    BKM19_002535
   03400 DNA repair and recombination proteins [BR:pamg03400]
    BKM19_002535
Enzymes [BR:pamg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BKM19_002535
Transcription machinery [BR:pamg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BKM19_002535
DNA repair and recombination proteins [BR:pamg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BKM19_002535
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: AVB12605
Position
complement(380367..380630)
AA seq 87 aa
MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGLMD
YAVIAEAEIVEDEPLFAAFEDESNEAV
NT seq 264 nt   +upstreamnt  +downstreamnt
atggcccgcgtaaccgttgaagactgcctagaacacgtggataaccgctttgagctggtc
atgctctctaccaagcgtgcccgtcaactggcaaccggcggcaaagaaccaaagctggcc
tgggaaaatgacaagcctaccgttatggcactgcgtgaaatcgcggctggcctgatggat
tacgctgtaatcgcagaagccgaaatcgttgaagatgaaccattgttcgcagcgttcgag
gacgagtccaacgaggccgtctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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