KEGG   Pseudomonas amygdali: BKM19_024405
Entry
BKM19_024405      CDS       T05354                                 
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
pamg  Pseudomonas amygdali
Pathway
pamg02020  Two-component system
pamg02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pamg00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BKM19_024405
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BKM19_024405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pamg03021]
    BKM19_024405
Transcription machinery [BR:pamg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BKM19_024405
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID CCDC14 HTH_IclR TrmO_C HTH_21
Other DBs
NCBI-ProteinID: AVB16348
Position
5004073..5005566
AA seq 497 aa
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSD
PLADNIEQKPNPDVQEPTYQESAPTVDNLEDGEWNERIPNELPVDTAWEDIYQTSASSLP
SNDDDEWDFTTRTSAGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLEEI
LESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLMEAQRLV
TDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq 1494 nt   +upstreamnt  +downstreamnt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggcaatccgcttactccagctttccacactggacctccagcaggagatccaggaggcg
ctggaatcgaaccccatgctggaacggcaggaagaaggcgacgacttcgacaactccgac
ccgcttgccgacaacatcgaacaaaagcccaaccccgacgttcaggaaccgacctaccag
gaatccgcgcctaccgtggataatctcgaagacggcgaatggaacgagcgcattcccaac
gaactgcccgtcgataccgcatgggaagacatctaccagaccagcgccagcagcctgcca
agcaacgatgatgacgagtgggacttcaccacacgcacatctgcaggcgaaagcctgcaa
agccacctgctgtggcaattgaacgtcgccccgatgtccgacaaggaccgcctggtggcg
gttacgctgatcgactgcatcaacaaccagggctatctggacgaaaccctcgaggagatt
ctcgagtctttcgatcccgagctggacatcgaactcgacgaaatcgaagccgtactgcac
cgcatccagcagtttgagccggcaggcatcggcgcccgaaacctgagcgaatgcctgctc
ctgcagcttcgccagttgccagccaaaacaccttggctgatggaagcgcaacggttggtc
accgactacatcgacctgctgggaagtcgcgattacggccagttgatgcggcgcatgaag
ctcaaggaagacgagctgcgccaggtcatcgagctggtccagagcctcaacccgcgccct
ggctcacaaatcgaatccacagaagccgagtacgtcattcccgatgtgatcgtgcgcaag
gacaacgagcgctggctggtagagctcaatcaggagtccgtaccgcgcctgcgtgtcaat
ccgcaatatgcaggttttgtacgccgggccgataccagcgcggacaacaccttcatgcgc
aatcagttgcaagaggcgcgctggttcatcaagagcctgcaaagccgcaacgagacactg
atgaaggtcgccacccagatcgtcgaacatcagcgcggctttcttgagtacggcgacgag
gcgatgaagccgcttgtcctgcacgacattgccgaggcagtgggcatgcatgaatcgacc
atctcgcgcgtgaccacccagaagttcatgcacacgccacgcggcatttacgagctgaaa
tacttcttctcgagccatgtgagcacttccgagggcggtgaatgctcgtccacggcaatt
cgcgcaatcatcaaaaaactggttgcggcggaaaatcagaaaaagccgttgagtgatagc
aagatcgctggtttactggaggcacaaggcattcaagtagcccgtcgcacagtcgccaag
taccgcgagtcactcgggatagcgccttccagtgagcgtaagcggctgatgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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