KEGG   Pseudomonas amygdali: BKM19_027375
Entry
BKM19_027375      CDS       T05354                                 
Name
(GenBank) sarcosine oxidase subunit alpha
  KO
K00302  sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1]
Organism
pamg  Pseudomonas amygdali
Pathway
pamg00260  Glycine, serine and threonine metabolism
pamg01100  Metabolic pathways
Module
pamg_M00975  Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:pamg00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    BKM19_027375
Enzymes [BR:pamg01000]
 1. Oxidoreductases
  1.5  Acting on the CH-NH group of donors
   1.5.3  With oxygen as acceptor
    1.5.3.1  sarcosine oxidase (formaldehyde-forming)
     BKM19_027375
    1.5.3.24  sarcosine oxidase (5,10-methylenetetrahydrofolate-forming)
     BKM19_027375
SSDB
Motif
Pfam: GCV_T SO_alpha_A3 Fer2_4 GCV_T_C Pyr_redox_2 FAD_oxidored FAD_binding_2 HI0933_like NAD_binding_8 DAO GIDA Pyr_redox_3 FAD_binding_3 Thi4 Pyr_redox AlaDh_PNT_C Lycopene_cycl DDR1-2_DS-like
Other DBs
NCBI-ProteinID: AVB16867
Position
5597541..5600561
AA seq 1006 aa
MSQTQRLPNGGRINRSKVLNFTFNGQTYQGFEGDSLASALLANGVDIIGRSFKYSRPRGI
FAAGSEEPNAVLQIGATEATQIPNVRATQQALYAGLVATSTNGWPSVNTDVMGILGKVGG
KLMPPGFYYKTFMYPQSFWMTYEKYIRKAAGLGRSPTENDPDSYDAMNQHCDVLIVGAGP
AGLAAALAAGRSGARVIVADEQEEFGGSLLDSRESLDGKPAAEWLATVVAELKSLRNVTL
LPRATVNGYHDHNFLTIHERLTDHLGDRAPIGMVRQRMHRVRAKRVVLAAGTHERPLVYG
NNDVPGNMLAGAVSTYVRRYGVAPGKKLVLSTNNDHAYRVALDWLDASLQVVAIADARHN
PRGPLVEEARAKGIRILTGSAVIEARGSKRVTAARVAAIDVKTHAVTSPGEWLDCDLVAS
SGGYSPIVHLASHLGGKPVWREDILGFVPGEAPQKRICVGGVNGVYSLADSLADGFEGGV
RAASEAGFKVVEGVMPKALSRAEEPTLALFQVPHEKGTARAPKQFVDLQNDVTAAAIELA
TREGFESVEHVKRYTALGFGTDQGKLGNVNGLAIAARSLKVSIPEMGTTMFRPNYTPVTF
GAIAGRHCKHIFEPVRFTALHAWHVKNGAEFEDVGQWKRPWYFPKNGEDLPAAVARECKA
VRDSVGLLDASTLGKIDIQGPDAREFLNRIYTNAWTKLDVGKARYGLMCKEDGMVFDDGV
TACLADNHFLMTTTTGGAARVLQWLEIYQQTEWPDLKVYFTSVTDHWATLTLSGPNSRKL
LSEVTDIDLGREAFPFMTWKEGLVAGVPARVFRISFTGELSYEVNIQADYAMGVLEKIAE
AGKQYNLTPYGTETMHVLRAEKGFIIVGQDTDGSMTPDDLNMGWCVGRTKPFSWIGWRGM
NREDCVREQRKQLVGLKPVDPTKWLPEGAQLVFDTKQTIPMSMVGHVTSSYAHNSLGYSF
AMGVVKGGLARMGERVFAPLADGSVIEAEIVSSVFFDPKGERQNVE
NT seq 3021 nt   +upstreamnt  +downstreamnt
atgagccagacccagcgcttgcccaacggcggccgtatcaatcgcagcaaggtgctcaac
ttcaccttcaacggccagacctatcagggctttgaaggcgactcgctggcctctgccctg
ctggccaatggcgtcgatatcatcggccgcagtttcaaatactcccgcccgcgcggcatc
ttcgcagcgggttcggaagagccaaacgccgtattgcagatcggcgcgaccgaagcgacg
caaatccccaacgtgcgcgccacgcaacaagcgctctatgcaggactggtcgccaccagc
accaacggctggccaagcgtgaacaccgacgtcatgggcattttgggcaaggtcggcggc
aagctgatgccaccgggcttctactacaaaaccttcatgtacccgcaatcgttctggatg
acttacgaaaagtacatccgcaaggctgcgggcctggggcgctcgccgaccgagaacgat
ccggacagctacgacgcgatgaaccagcactgtgacgtgctgatcgtcggcgcaggccca
gccgggctggccgccgcgctggctgccggccgcagtggtgcccgagtgatcgttgcggat
gaacaggaagagttcggcggcagtctgctcgacagccgtgaaagtctcgatggcaaaccc
gctgctgaatggttggctacggtggtcgccgagctgaaaagcctgcgcaacgtcacattg
ctgccgcgcgccacggtcaacggctaccacgatcacaatttcctgaccattcacgaacgt
ctgaccgatcacctcggtgatcgcgcgcccatcggcatggttcgccaacgtatgcaccgg
gtacgcgccaagcgtgtggtgctggctgccggtactcacgagcgcccgctggtttacggc
aacaacgatgtgccgggcaacatgctggccggcgccgtttcgacctatgtccggcgttac
ggcgtagcaccgggtaaaaaactggtgctgtccaccaacaacgaccatgcctaccgcgtt
gcgctggactggctcgacgccagcctgcaagtggttgcgattgccgatgcgcggcacaac
ccgcgcggcccgctggttgaggaagcccgcgccaaaggcattcgcattctgaccggcagc
gcagtgattgaagcccgtggcagcaaacgcgtgacagctgcccgcgtcgccgcaatcgac
gtcaagacgcacgcagtcaccagccccggcgaatggcttgattgcgatctggtggccagc
tctggcggctacagcccgatcgtgcacctggcctcgcacttgggtggcaaaccggtatgg
cgtgaagacatcctcgggtttgtgccgggtgaagcaccgcagaaacgtatttgcgtaggc
ggcgtcaatggtgtctacagtcttgcagacagcctggccgatggttttgaaggtggcgtg
cgcgcggccagcgaagcaggcttcaaggtggtcgaaggcgtgatgcccaaagccctcagt
cgcgccgaagaaccgacactggcgctgtttcaggtgccgcacgaaaaaggcaccgcacgg
gcacccaagcaattcgtcgacctgcagaacgacgtgaccgctgctgccatcgagctggcg
acccgtgaaggcttcgagtcggtcgagcacgtaaaacgctacaccgcgctgggtttcggt
actgatcagggcaagctgggcaacgtcaacggtctggccatcgccgcccgttcactgaaa
gtgtcgatcccggaaatgggcaccaccatgttccgccccaactacacgccggtcacgttc
ggcgcgatagccgggcgtcattgcaagcacatcttcgaaccggtgcgtttcaccgcactg
cacgcctggcatgtcaaaaacggtgccgaattcgaagacgtcggccagtggaaacgacct
tggtactttccgaaaaacggcgaagacctgcccgcagctgtcgctcgcgaatgcaaggct
gtacgcgacagtgtgggtctgctggacgcttcgacgctgggcaaaatcgacattcaaggc
ccggatgcccgcgaattcctcaaccgcatctacaccaacgcgtggaccaaactggacgtg
ggcaaggcccgctacggtctgatgtgcaaggaagacggcatggtcttcgatgatggcgtg
actgcctgcctcgccgacaaccacttcctgatgactaccaccacaggcggcgctgcacgc
gtcctgcaatggctggaaatctatcagcagaccgaatggccggacctgaaagtgtatttc
acctcagtgaccgatcactgggcgacgctgacgctgtccggccccaacagccgcaagctg
ctcagcgaagtcactgatatcgacctgggccgtgaagccttcccgttcatgacctggaag
gaaggtctggtcgccggtgtgccagctcgcgtgttccgtatctcgtttaccggcgagctg
tcctacgaggtcaacattcaggctgactacgccatgggcgttctggaaaagatcgccgag
gcaggcaaacagtacaacctgacgccttacggcactgaaaccatgcacgtactgcgcgcc
gaaaagggcttcatcatcgttggccaggacaccgatggttcgatgactccggacgacctg
aacatgggctggtgtgtcggccggaccaagccattctcgtggatcggctggcgcggcatg
aatcgcgaagactgtgtacgagaacagcgcaagcaactggtcggcctcaagcctgtcgac
ccgaccaaatggctaccagagggcgcgcaactggtgttcgataccaaacagacgatcccg
atgagcatggttggccatgtgacttccagctatgcacacaactcgctgggctattcgttt
gcgatgggcgtggtcaaaggcggcctggcgcgtatgggcgagcgggtgttcgcacctttg
gcagacggcagcgtgatcgaagccgagatcgtttcttcggtgttcttcgatccaaagggc
gagcgccagaatgtcgagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (18)   
   Pfam (18)   
All databases (39)   

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