KEGG   Pseudomonas amygdali: BKM19_027930
Entry
BKM19_027930      CDS       T05354                                 
Name
(GenBank) tRNA 4-thiouridine(8) synthase ThiI
  KO
K03151  tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
Organism
pamg  Pseudomonas amygdali
Pathway
pamg00730  Thiamine metabolism
pamg01100  Metabolic pathways
pamg01240  Biosynthesis of cofactors
pamg04122  Sulfur relay system
Brite
KEGG Orthology (KO) [BR:pamg00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00730 Thiamine metabolism
    BKM19_027930
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04122 Sulfur relay system
    BKM19_027930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pamg03016]
    BKM19_027930
Enzymes [BR:pamg01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.1  Sulfurtransferases
    2.8.1.4  tRNA uracil 4-sulfurtransferase
     BKM19_027930
Transfer RNA biogenesis [BR:pamg03016]
 Prokaryotic type
  tRNA modification factors
   Other tRNA modification factors
    BKM19_027930
SSDB
Motif
Pfam: ThiI THUMP QueC Rhodanese tRNA_Me_trans
Other DBs
NCBI-ProteinID: AVB16966
Position
complement(5716402..5717856)
AA seq 484 aa
MKLIVKVFPEITIKSPPVRKKFIRQLGKNIRTVLRELDADIVVGGVWDNLEVETRQTDPK
VLQGIRDRLSCMPGIANFLQVAEYPLGDMDDIVAKCKLHYADLLPGKMFSVRCKRAGRHD
FSSMDVEKYVGSKLRMQCGAAGIELKKPDLVVRMEIRDQRLFVVHDQHQGMGGYPLGALE
QTLVLMSGGFDSTVAAYQIMRRGLMAHFCFFNLGGRAHELGVMEVAHFIWKKYGSSQRVL
FVSVPFEEVLGEILQKVDNSHMGVVLKRMMLRAASAVADRLEIDVLVTGEAISQVASQTL
PNLSLIDAATDKLVLRPLVASHKQDIVDLATEIGTADFARHMPEYCGVISVNPKTNAKRN
RVEYEEKQFDMAILEQALERAKLISIDRVIDDLSRNVDIEEVSQALAGQVIIDIRHPDAQ
EDQPLQVPGVEIQTLPFYALNSRFKALDDTRQYLLYCDKGVMSRLHAHHLLSEGHANVRV
YRPS
NT seq 1455 nt   +upstreamnt  +downstreamnt
atgaaactaatcgttaaagtttttccagaaatcaccattaaaagcccgccggtgcgcaag
aaattcatccggcaactgggcaagaacattcgtaccgtgctccgtgaactggacgcggac
attgtcgtgggtggcgtatgggacaaccttgaggtggagacccgccagaccgaccccaaa
gtgctgcagggcatcagggaccggctaagttgcatgcccggcattgccaactttctgcag
gtggccgagtacccgttgggcgacatggatgacatcgttgccaagtgcaaactgcactac
gccgacctgctgcccggcaagatgttttcagtgcgttgcaagcgcgccggtcgccacgat
ttcagctcgatggatgtcgagaaatacgtcggtagcaagttgcgcatgcaatgcggtgct
gccggaatcgagctgaaaaagcccgatcttgtcgtacggatggaaattcgcgaccaacgg
ttgtttgtcgttcatgaccagcaccagggcatgggcggctacccgctgggtgcgctggag
cagaccctggtattgatgtccggcggtttcgattcgaccgttgcggcctaccagatcatg
cgccgcggccttatggcgcacttctgcttcttcaatctgggcggaagagcccatgaactg
ggcgtgatggaagtcgctcactttatctggaagaagtacggcagttcgcagcgggtgctg
tttgtcagcgtgccattcgaggaagttctcggagaaattctgcagaaagtcgataacagt
catatgggtgtagttttgaagcgtatgatgttacgcgctgcatccgccgtggctgatcgt
ctcgaaatcgacgtgctggtaactggcgaagcgatttcacaggttgccagccagacgctg
ccaaacctgtcgctgatcgacgcggctacagacaagctggtcctgcgaccgctggtcgcg
agccacaagcaagacatcgtggacctggcgactgaaataggcactgccgactttgcccgc
cacatgcctgagtattgcggggtgatttcggtcaacccgaagaccaacgccaagcgaaat
cgcgttgagtacgaagaaaaacagttcgacatggcgattctcgagcaagcgcttgaacgc
gcgaagctgatttcgatcgatcgggtgatcgacgatctgagccgcaatgtcgacatagaa
gaagtcagccaggcgctggccggtcaggtcatcatcgacatccgtcacccggatgcccag
gaggaccagccgctgcaagtgcctggcgtggagatacagacgttgccgttctacgcattg
aacagccgtttcaaggcactggatgacacgcgccagtaccttttgtattgcgacaaaggc
gtcatgagtcgcctgcatgctcaccatttgctcagtgaggggcatgccaatgtgcgcgtt
tatcgaccgagctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (4)   
   KEGG MODULE (2)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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