KEGG   Paenisporosarcina antarctica: E2636_03560
Entry
E2636_03560       CDS       T05927                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
panc  Paenisporosarcina antarctica
Pathway
panc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:panc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E2636_03560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:panc03400]
    E2636_03560
Enzymes [BR:panc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E2636_03560
DNA repair and recombination proteins [BR:panc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E2636_03560
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M Macscav_rec DNA_ligase_A_C
Other DBs
NCBI-ProteinID: QBP40281
UniProt: A0A4P6ZVB3
Position
725518..727368
AA seq 616 aa
MKPMLLTAATDIPLGKEWVYEAKYDGFRCILDWEVDATPILKSRNGKVLNQMFPEIISFC
HDNQKKISSSLPLTLDGELVYLTNNFQSTFSIVQLRGRMRNQDVIMKHVKEFPCHYIVFD
LLKVKGEVQTDLSITKRKHKLQKFFQKIKLPISISYEDINRIQAIDVYQDNEVLWKHIKV
SNGEGIVAKQKNSSWISDKRTVQWLKIKNWRYVTVILTKYDKSNGFFHGAIYHKKALVEI
VTFRHGLKEEELNTLIMLFQSSGTKLAEKVWALEPSICVEIACIDFDGKYLREPRFHAFN
FDKEPSDCRWQQMQRQLFPLPKMITITHPDKPIWPVNSIQKDDYLLYLQNISPYILPFLR
DRLLTVIRFPHGSMGESFYQKNSPVTVPDFVTTKLVDDIRYIVCNDVESLLWLGNQLALE
FHIPFQTIKTNQPTEIVFDLDPPSVHEFSLAIEAALRMKAIFDQFGIQSFVKTSGGKGIQ
VYIPLPMNTFSYEDTRVFTKFVCNFLCEQEPQWFTTERLKKNRHNKLYLDYVQHDEGKTI
IAPYSPRGNEQGLIATPLYWNEVCNSLKPDLFSIPLVIERLKKQGNPFRNFQQGIEEQKF
ADVLQQLKELVKISHK
NT seq 1851 nt   +upstreamnt  +downstreamnt
ttgaagccaatgcttttaactgccgcaacggatattcccctaggaaaagaatgggtgtac
gaagctaaatatgatggttttcgttgcatattggactgggaggtagacgctactcccatt
cttaagagtagaaatgggaaagtgcttaatcagatgtttccagagattattagcttttgt
catgacaatcagaaaaaaatcagttcttctttaccattaacattagatggagagttagtg
tatttaacgaataattttcaaagtactttttccattgttcaattaagaggtcgaatgcgg
aatcaagatgtaatcatgaaacatgttaaagaatttccgtgtcattatattgtgtttgat
cttttgaaagttaaaggagaagttcaaacagatctttcaatcacaaaacgaaaacacaaa
ctacaaaaattttttcagaagataaagcttccaatttcaataagctatgaagacataaat
cggattcaagcaatagatgtttaccaagacaatgaagtgttgtggaagcatatcaaggta
agcaatggggaaggaatagtcgccaagcaaaaaaacagtagttggattagtgataaacgt
accgtccaatggttaaaaataaaaaactggcgatatgtcactgtcatcttaactaaatat
gataaaagcaatgggttttttcatggggctatttatcataagaaggctcttgttgagatt
gtgactttccgtcacggtcttaaagaagaagagttaaatacattaataatgctatttcaa
tcgagtggaactaagttagccgaaaaggtttgggcactagaaccatcaatttgcgtggag
attgcctgtattgatttcgatggaaagtatttaagggaaccaaggtttcatgcatttaat
tttgacaaggagccaagcgattgtcggtggcagcaaatgcaacgacagctttttccactt
ccaaaaatgataacaataacccaccctgacaagcctatatggccggtaaatagtatacaa
aaagatgattacttactgtacttacaaaatatatctccctatattctgccttttttacgt
gaccgccttcttacggttattcgttttccacacggttcaatgggtgaaagtttttatcaa
aaaaatagcccagttactgttcctgattttgtgacaactaaactggtagatgacatccgt
tatattgtctgtaatgacgttgaatctttactgtggcttggaaaccaacttgcgctagag
tttcacattccttttcaaacgattaaaacgaatcagccaactgaaattgtttttgacctt
gaccctccttcagttcatgagttttctttagccatagaggcggcattgcgaatgaaagct
atttttgaccaattcggaattcaatcttttgtgaaaacctctggtggaaaagggatacaa
gtttatattccattacctatgaacactttttcttatgaagacacccgggtatttacaaag
tttgtttgtaatttcttatgcgaacaggagccgcaatggtttaccacagagcgacttaaa
aagaatcgacataataaattatatttggactatgtccaacatgatgaagggaaaacgata
atagctccctattctccaagaggtaacgaacaagggctaatcgcgactccactatactgg
aatgaagtatgtaattcattgaaaccagatttattttccattcccttagttattgaaagg
ttaaagaaacaaggaaatccatttcgtaatttccaacaaggaatagaagaacagaagttt
gcagatgtcctacaacaactaaaagaactagtgaaaatctctcataaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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