KEGG   Pandoraea sp. XY-2: DRB87_18800
Entry
DRB87_18800       CDS       T06086                                 
Name
(GenBank) ribonuclease E/G
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
pand  Pandoraea sp. XY-2
Pathway
pand03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pand00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DRB87_18800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pand03019]
    DRB87_18800
   03009 Ribosome biogenesis [BR:pand03009]
    DRB87_18800
Enzymes [BR:pand01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     DRB87_18800
Messenger RNA biogenesis [BR:pand03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DRB87_18800
Ribosome biogenesis [BR:pand03009]
 Prokaryotic type
  rRNA processing factors
   DRB87_18800
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: QBC32975
Position
4154384..4157608
AA seq 1074 aa
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFREGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWRAVEGAATNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYARQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDSLKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVSAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDTPRASYVLAEEAARALEEDPAAYSKKKEDVRPRQEAAVKGITP
EQPAPAAQPRPAPVAATAPAPAVPARSGGFIGFVKRLLGLEPAAPAPVQAEEPAKPNARP
PRERHERPHQQNRNRRGNARDDSKSGKDNAGQPAREGREGREGREGREGREGRAARPERA
ERNERGDRNERQEGRDKRERDEAQPRQPAQDVRAEEGREPREGRERGNRRDRNERRDRRQ
PDGEDGQQATPQRVAQAAPLVAEQEDFEQDRLTAQVEGAPLLAGEEGEQGGEERRRSRRR
GRRGGRREREANEQQLHGEGDQAEGATSTGEEGVHAPVLTHESVDTTATDVPARAAAPVI
AAETVTAADVPTVQVESTPAPVHVEPAEVPAAHVTEAAPLALPEVASPVIAEPIAPVNVA
PLPAVEVAAPVVPPVSAPLPAATPSPAQPIVPAEALTEIAATAAIASTPADVSPAPMAST
APSTPLEIVETAKPVQTPAPTAPVATVAATEVATTRPAPAAVAPALESNALESSLASVGL
VWVHTDADKHRAAREAAAQAAPAPHVPRERRPSKPASSGPMEQVETRGSSDHVA
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgaaacgcatgttgttcaacgccacgcagcaggaagaactgcgcgtggcaattgtcgat
gggcagaaactcatcgatatcgatatcgagacggccggccgcgaacagcgcaaaggcaat
atctacaagggtattattacccgtatcgaaccctccctcgaagcctgcttcgtcaactac
ggcgaaggccgccacggcttcctgccgttcaaggaagtcgcccgcgcgtacttccgcgaa
ggtgccgatgtgcgcaatgcgcgcatccaggacgccctctccgaaggccaggaactcatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgccgccctcacgaccttcatttcg
ctggccggccgttacctcgtgctgatgccgaacaacccgcgtggcggtggcgtgtcgcgc
cgcatcgagggtgaagaccgccaggaactgcgcgagacgatgggtcagctcgaactgccg
gaaggcatgagcatcatcgcccgcaccgcaggcatcggtcgctcggccgaagagctgcag
tgggacttgaactacctgctgcaactctggcgcgccgtcgaaggcgccgccaccaacatc
gaactgccgcgcgactcggcgctgatctatctcgagtcgagcctcgtcattcgcgccatc
cgcgattatttccaacccgatatcggtgaaatcctcatcgatacggaagaaatctccgag
caagcgcgtaacttcatgcaggtggtcatgcccgatcacctcaatcgcgtgaagcaatat
cgcgacgacgtgccgctgttctcgcgtttccagatcgagcatcagatcgaaacggcgtac
gcacgccaagtgccgctgccttcgggcggcgcgatcgtgatcgatcacaccgaagcgctc
gtgtcgatcgacgtgaactcggcgcgcgccaccaagggtgccgacatcgaggaaacggcg
cttcgcaccaacctggaagcggccgatgaagtggcgcgccagctgcgtctgcgcgacttg
ggcggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaagtc
gaacaacgtgtgaaggactcgctcaagcatgaccgcgcgcgcgttcagatgggcaagatc
tcacgtttcggcttgatggaactgtcgcgccagcgtctgcgtccgtcgctgtcggaaggc
acgcacgtgacctgcccgcgctgcaatggcaccggccacatccgcgacgctgaatcgtcg
gctctgcaagtcctgcgcatcatccaggaagaggcgatgaaggagcacacggcagccatc
cactgccaggtgccggtcgaagtctccgcgttcctgctcaacgaaaagcgccaggaaatc
aacaagatcgaggcacgcttcaaggtcggcgtgctgctgatcccgaacaagcatctcgaa
acgccgcactataagctcgagcgcctgcgtttcgacgatccgcgtctggataccccgagg
gccagctacgtcctcgccgaagaggcagcgcgtgccctggaagaggatccggcggcttac
agcaagaagaaggaagacgtgcgcccgcgccaggaagccgccgtcaagggcattacgcct
gaacagccggcaccggccgcgcaaccgcgtcctgcgcccgtcgcggcgaccgcacccgcg
cctgcggtccccgcacgcagcggtggcttcatcggctttgtgaagcgcctgctgggcctc
gagcctgcagcacccgcaccggtccaggccgaagaaccggccaagcccaacgctcgtccg
ccgcgcgagcgccacgaacgtccgcatcagcaaaaccgcaaccgtcgtggcaatgctcgc
gacgacagcaagtccggcaaggacaacgccggccaaccggcgcgtgaaggtcgtgagggc
cgcgagggtcgtgagggccgtgaaggtcgtgagggtcgcgccgcccgtccggaacgtgcc
gagcgcaacgaacgcggtgatcgcaatgagcgtcaggaaggccgtgacaagcgtgagcgc
gacgaagcgcagccgcgtcagccggcgcaggacgtgcgtgccgaggaaggtcgcgagccg
cgcgaaggccgcgaacgcggcaatcgtcgcgaccgcaacgagcgtcgtgatcgtcgtcag
cccgacggggaagacggccagcaagccacgccgcaacgcgtcgcccaagccgccccgctc
gtcgcagagcaggaagatttcgaacaggatcgtctgacggcgcaggttgaaggcgcaccg
cttctcgcgggcgaggaaggcgagcaagggggtgaagagcgccgccgcagccgtcgtcgc
ggtcgccgcggtggccgtcgcgagcgtgaggccaatgagcagcaactccatggcgaaggc
gatcaggccgaaggcgcgacatcgaccggcgaggaaggtgtgcacgccccagtgctgacg
cacgaatccgtcgacaccaccgcgaccgatgtcccggctcgtgcggcagcgcccgtcatt
gcggcagagactgtcacggcggccgatgtgccgacggtgcaggtcgaatcgacgcccgcc
ccggttcacgtcgagccggcggaagtcccggcggcacacgtgaccgaagccgcgccgtta
gcgctgccggaagtcgcgtcgccggtcatcgccgaaccgatcgccccggtcaacgtggca
ccgctgcctgcagtggaagtcgccgcaccggtggtcccgccggtcagcgcgccgttgcct
gcagccacgccgagcccggcgcagcctatcgtcccggccgaggccctgaccgagatcgcc
gccacggcagccatcgccagcaccccggcggacgtcagccccgcgccgatggcatccacc
gcaccgtcgacgccgctcgagatcgtcgaaacggcgaagccggtgcaaacgccggcaccg
accgcaccggtagccaccgttgccgcgacggaagtcgcgacgactcggccggccccggcc
gccgtagcgcctgcgctggaaagcaacgcgctggagtcgtcgctggcaagtgtgggtctg
gtctgggtccacacggacgccgacaagcaccgcgccgccagggaggccgcagcgcaagct
gcaccggcaccgcacgtgccgcgcgagcgccgtccgtccaagccggccagcagtggcccg
atggagcaagtggaaacgcgcggctcgtcggatcacgtggcctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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