KEGG   Pseudomonas antarctica: A7J50_1681
Entry
A7J50_1681        CDS       T04830                                 
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
panr  Pseudomonas antarctica
Brite
KEGG Orthology (KO) [BR:panr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:panr03032]
    A7J50_1681
   03400 DNA repair and recombination proteins [BR:panr03400]
    A7J50_1681
Enzymes [BR:panr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     A7J50_1681
DNA replication proteins [BR:panr03032]
 Prokaryotic type
  DNA Topoisomerases
   A7J50_1681
DNA repair and recombination proteins [BR:panr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      A7J50_1681
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_4
Other DBs
NCBI-ProteinID: ANF85104
UniProt: A0A172YY87
Position
1824944..1827565
AA seq 873 aa
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWDVHADLGTAKGAN
VRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVAMARTYIESEFGKKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVAASDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPESGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCDGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq 2622 nt   +upstreamnt  +downstreamnt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggtaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagccggccgccaagcgcggcaaggcggctgcgggcgaa
ggtccggtgctcacccctaaagagaaagcgcgcaagcagctggtctcccgcatgggtgtg
gacccggaacatggctggaaggccaagtacgaaatccttcccggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaagatgctgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgggaagccatcggcggtgacgacagccgc
tacaagcgtgtcgtgttcaacgaaatcaccaagaaagccatccaggaagccttctccaag
ccgggcgagctggacatcgaccgtgtaaacgctcagcaggcccgtcgcttcctcgaccgc
gtcgtgggctacatggtctcgccattgctgtgggccaagatcgcccgtggcctgtccgcc
ggccgtgtgcaatcggtagcggtcaagctggtggtagagcgtgagcgcgagattcgtgcg
ttcaaccccgaagaatactgggacgtgcacgctgacctcggcactgccaagggcgccaac
gtgcgctttgaagtagcccgcgagaaaggcgaggcgttcaagccgctgaatgaagcccag
gccatggccgcgctggagaagctcaaatcttccagctacagcatcgtcaagcgtgaagac
aaaccgaccagcagcaagccgtcggcgccgttcatcacctccaccctgcaacaggccgcg
agcaaccgcctgggtttcggtgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacttatatgcgtaccgactccaccaacctgtcgcaagacgcggtggcg
atggcgcgtacttatattgaaagcgagttcggcaagaaatacctgccggagaagccgaac
gtctacagcagcaaagaaggcgcccaggaggctcacgaagcgattcgtccttctgacgcc
aacaccgagccaagcaagctgagtggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccaattcctggcgtgccagatgctgccggcgcaatacctgtccaccaccgtc
agtgtggcggcttccgacttcgagctacgtgccaagggccgtatcctcaagttcgacggc
tacacccgcgtcatgccgcaaattgccaagccaggcgacgacgatgtgctgccggacatg
gcccagggcgatacgctcaagctgatcaagctcgacccgtcccagcacttcaccaagccg
ccggcgcgttactccgaagccagcctggtgaaagagatggaaaagcgcggtatcggtcgt
ccttcgacctatgcggcgatcatctcgaccattcaggaccgtggctacgtggccctgcac
aaccgtcgtttctattcggaaaagatgggcgacatcgtcactgagcgcctgtccgagagt
ttctccaacctgatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccagggcgagcgcgactggaaaaacgtgctcgacgagttctacggcgacttcaaaaag
aaactcgaagtggccgaaagccctgagagcggcatgcgtgccaaccagccggtaatgact
gacatcccgtgcctgacctgcgggcgcccgatgcaaattcgtacggcgtccaccggtgtg
ttcctcggttgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaat
ctggtgccgggtgacgaaatcgcggcagacgacgagggtgaatccgagtcgctggtactg
cgcggcaagcaccgttgcccgatctgcagcacggcaatggacgcctacctgctcgacgag
aagcacaagttgcacatctgcggtaacaacccggattgcgacggctacgagatcgaagag
ggcagctaccgcatcaagggctacgaaggcccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttctttggttgcaccaacccgacctgc
aagaacacccgcaaactgctgaaaagcggtgacgcggcgccgccaaagatggacccggtg
aagatgcccgaactcaagtgcgagaaggtcaacgacacctacatcctgcgtgacggcgca
tcgggactgttcctggccgcaagccagttcccgaaaaaccgcgagacccgcgcgccgctg
gtgctggagatcgtgccgcacaaggacgaaatcgatcctaagtaccacttcctgtgtgaa
gcgccgaagaaggaccccgacggtcgcccggcggtgatccgttacagccgtaaaaccaag
gagcagtacgtgcagaccgaagtggacggcaagcctaccggctggaaagcgttctacgac
ggcggcaagtggaaggtcgaggacaagcgccagggcgcttga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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