KEGG   Pantoea sp. SO10: FCN45_01145
Entry
FCN45_01145       CDS       T06053                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pans  Pantoea sp. SO10
Pathway
pans03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pans00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FCN45_01145 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pans03021]
    FCN45_01145 (rpoC)
   03400 DNA repair and recombination proteins [BR:pans03400]
    FCN45_01145 (rpoC)
Enzymes [BR:pans01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FCN45_01145 (rpoC)
Transcription machinery [BR:pans03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     FCN45_01145 (rpoC)
DNA repair and recombination proteins [BR:pans03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      FCN45_01145 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: QCP58067
Position
249640..253863
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYTKNEQEEFVAKTSIIDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIVAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMDNLQTETVINRDGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILIPRNTLIDEHWCDVIELNSVDAIKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSSGKLVIVSRNVELKMIDEFGRTKESYKVPYGAVMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMIDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISAGDTLSRVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATISSVGSTDFLEGEQAEYSRIKISNRELEANGKIGATFMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRSAGEAPV
APQVTADEASASLAELLNAGLGGSDDE
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtaccttcaagcctgagcgtgacggtcttttctgtgcccgt
atttttggaccggtaaaagactacgaatgcctgtgcggtaagtacaagcgtttaaaacat
cgcggcgtgatctgtgagaagtgtggcgttgaagttacacagaccaaagtacgtcgtgag
cgcatgggccacattgagttggcttcaccgactgcgcacatttggttcctgaaatcactg
ccttcgcgtatcggcttactgctggatatgccactgcgtgatatcgagcgcgtgctgtac
ttcgaatcttatgtggttatcgaaggcggcatgaccaacctggaaaaacgtcagattctg
accgaagagcagtaccttgacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctatccaggcgctgctgaaaaacatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgagaccaactccgagaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgcccgctggtaccgctggacggtggtcgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaataaccgtttgaaa
cgcctgctggatctggctgcgccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgcactgctggataacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaaatctctggcagacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactctggccgttcagttatcaccgttggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctcttgagctgttcaaaccgttc
atctacggcaagttggaactgcgtggcctggccaccaccatcaaagccgctaagaaaatg
gttgagcgcgaagaggctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaactctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacattctgtcaccagcgaacggcgagccaatcatc
gttccttcacaggacgttgttttgggtctgtactacatgacccgcgacaaagtgaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtgtttatcgcgctggc
ctggccgagctgcatgcacgcgttaaagtgcgtatcactgaatacaccaagaacgagcag
gaagagttcgttgcgaaaaccagcattatcgacaccaccattggtcgtgcgattctgtgg
atgatcgttccgaaaggcctgccttactccatcgtcaaccaggcgctgggtaagaaagcc
atttctaagatgctgaacacctgttaccgcattcttggcctgaagccgaccgttatcttt
gctgaccaaaccatgtacaccggttttgcttacgcagcccgttcaggtgcctctgtaggt
atcgacgacatggtcatcccagcgaagaaagcggaaatcgtagccgaagcggaagcggaa
gttgctgagattcaggaacagttccagtctggtctggtaactgctggcgaacgttacaat
aaagttatcgatatttgggccgccgctaacgaacgcgtttccaaagcgatgatggataac
ctgcaaactgaaaccgtgatcaaccgtgatggcgaagaagagcagcaggtatcgttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaactgctaactccggttatctgacgcgtcgtctg
gtcgacgtagcgcaggatctggttgttaccgaagatgactgcggcacgttcgaaggcatc
atgatgactccagtcatcgaaggtggcgacgttaaagagccgctgcgtgagcgtgtactg
ggtcgtgtaacggctgaagacgttctgaagccaggcactgcggacatcctgatcccgcgt
aacaccctgatcgatgaacactggtgtgatgtgatcgaactgaattcagtcgatgcgatt
aaagtgcgctcggttgttggctgtgaaaccgacttcggtgtgtgtgcacactgctacggt
cgcgatctggcacgtggtcacatcatcaacaaaggtgaggccatcggtgttatcgcagca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaagaacaaaggtactatcaagctg
accaacgcgaagtctgtaaccaactcctcagggaaactggttatcgtttcacgtaacgtt
gagctgaagatgatcgacgagttcggtcgtaccaaagagagctataaagtaccttacggt
gcggtcatggctaaaggtgatggcgagcaggttgccgcgggcgaaaccgtagcaaactgg
gatccgcataccatgccggtcatcaccgaagtgggcggtttcattcgcttcactgacatg
atcgacggtcagaccattacgcgtcagactgacgacttaaccggtctgtcatcgctggtg
gttctggattctgcagaacgtactgcgggtggtaaagatctgcgtcctgcgctgaaaatt
gttgatgccaacggaaatgatgttttgattccaggtaccgacatgccagcacagtacttc
ctgccgggcaaagcaattgttcagctggaagatggcgttaagatcagtgccggtgacacg
ctgtcgcgtgttccgcaggaatctggcggtaccaaggatattaccggtggtctgccgcgc
gttgctgacttgttcgaagcgcgccgtccgaaagagccagcaatcctggcggagatcagc
ggtatcatctccttcggtaaagagaccaaaggtaagcgtcgtctggtgattacgccggtt
gatggtagcgatccgtacgaagagatgattccaaaatggcgtcagcttaacgtattcgaa
ggtgagcgcgtagaacgtggtgacgtcgtatctgacggcccagagtctccgcacgacatc
ctgcgtctgcgtggcgtccatgctgtgacccgttacatcactaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagtcatcgttcgtcagatg
ctgcgtaaagcaaccatctcgagcgtgggaagcaccgacttcctggaaggtgagcaggct
gaatactcacgcatcaagatctctaaccgtgaacttgaagcgaatggcaaaatcggcgca
acattcatgcgcgatctgctgggtatcaccaaagcgtcactggcaaccgaatcgttcatc
tctgcagcatcgttccaggagaccacgcgtgtcctgaccgaagcagcagttgcaggtaag
cgtgatgaactgcgcggcctgaaagagaacgtcatcgtgggtcgtctgatcccagccggt
accggttatgcttatcaccaggatcgtatgcgtcgccgctctgcgggcgaagcaccggtt
gcaccgcaggttactgcggatgaagcctctgcaagcctggcagaattgctgaacgccggt
ctgggcggaagcgacgacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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