KEGG   Pantoea sp. SO10: FCN45_19220
Entry
FCN45_19220       CDS       T06053                                 
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pans  Pantoea sp. SO10
Pathway
pans03030  DNA replication
pans03410  Base excision repair
pans03420  Nucleotide excision repair
pans03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pans00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FCN45_19220 (ligB)
   03410 Base excision repair
    FCN45_19220 (ligB)
   03420 Nucleotide excision repair
    FCN45_19220 (ligB)
   03430 Mismatch repair
    FCN45_19220 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pans03032]
    FCN45_19220 (ligB)
   03400 DNA repair and recombination proteins [BR:pans03400]
    FCN45_19220 (ligB)
Enzymes [BR:pans01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FCN45_19220 (ligB)
DNA replication proteins [BR:pans03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FCN45_19220 (ligB)
DNA repair and recombination proteins [BR:pans03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FCN45_19220 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FCN45_19220 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     FCN45_19220 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FCN45_19220 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH HHH_5 Expansin_C HHH_2
Other DBs
NCBI-ProteinID: QCP61388
Position
complement(4141102..4142871)
AA seq 589 aa
MKGCLSLLCCLFSIGCWAEALCPNWSPVRAGQEITQLQTQLRQWDDAYYRQGTNLVTDAD
YDSLQQRLQQWQRCFTPAHATYDAQLTTDGSTHHPVAHTGVRKLRDKLEVAYWMQDKSAL
WLQPKVDGVAVTLVYRQGKLASLISRGDGLRGEEWLAKSAHIPSIPQQLDTLREEVVLQG
ELFLQMTDHQQARDGGKNARAQVAGAMMRHDNSPLLEQLSVFIWAWPDGPNSMPDRLAQL
TQWGFGLAQSWSRQVSNEEEVAVWRDRWFRESLPFVTDGVVIHQSPVSAGRDWQPGQGSW
SAAWKYQPAEVSSEVLSVDFNVGRTGKIAVVLNLIPVQLEDKTVRRVNIGSLRRWRELDV
IAGDEVTLTLAGLGIPRLERVIWRVAQRDYPASPQEGEFHGLTCLHFSADCRAQFLSRLS
WLSQKSVLDIAGVQRSSWQRLLDSGAISHLFSWLTLTPDQIAQANGITPARAQLIWHRFN
LTREQPLRRWVSALGLPLPRAALQALPDAQWSQLLARTAESWQQLPGIGSVLAQRIVMML
QDAHLQQLIHFLQQQEIPATDSMFRMGIVEDRQTEAETQRQQAGEEAEQ
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaaggatgcctgagtctattgtgttgcttattcagtataggttgctgggccgaagcg
ctctgcccgaattggtcgccggtgcgcgcggggcaggaaatcacacagctgcaaacccag
ctacgacagtgggatgacgcgtattaccggcagggcacaaatctggtgaccgatgccgat
tacgacagcctgcaacagcgattacagcagtggcagcgctgtttcactccggcgcacgcc
acctacgatgcacaactcaccaccgacggcagtacgcatcatccggtggcgcataccggc
gtgcgcaaactgcgcgataagctggaagtggcgtactggatgcaggacaaatctgcgcta
tggctgcagccgaaagtcgatggcgtcgccgttactttggtatatcgacagggtaagttg
gcctcattgatcagtcgcggtgatggtttacgtggcgaagagtggctggccaaatccgca
catattccctccatcccgcagcagctggataccttgcgcgaggaagtggtgctgcagggt
gagctgtttctgcaaatgaccgatcatcaacaggcgcgtgacggcggcaagaacgcgcgc
gcgcaggtggcgggagcgatgatgcgccacgacaacagcccgctacttgagcagcttagc
gtatttatctgggcgtggccggatggacccaattcaatgcccgatcgtctggcgcagctc
acacaatggggatttgggctggcgcagagctggagccgtcaggtgagtaatgaagaagag
gtcgcggtatggcgcgatcgctggttccgcgaatcgctgccgtttgtcaccgatggcgtg
gtaattcatcaatcacccgtcagcgcagggcgcgattggcagcccggccagggcagttgg
tcagcggcatggaagtatcaaccagcagaagtcagcagcgaagtgctgtcagtggatttc
aatgtgggccgcacgggcaagatcgccgtggtgctaaatctgataccggtgcaactggag
gacaaaacggtacgccgggtaaacattggttccctgcgacgctggcgggaactggatgtg
atcgcgggtgatgaggtgacgctcacgctggcgggattaggcattccgcgactggagcgc
gtgatttggcgtgtggcgcagcgcgattatccagcgtcgccacaggagggcgaattccac
ggcttaacctgtctgcactttagcgccgactgccgggcgcagtttttatctcgccttagc
tggctcagccagaagtcggtactcgatattgcgggtgttcagcgcagcagctggcagcgc
ctgctggatagcggcgctatcagccatctcttttcctggctgacactgacgccggatcag
attgcgcaggctaatggcatcacgccggctcgcgcgcaacttatctggcaccgctttaac
ctgacgcgtgagcagccgctgcgacgctgggtgagtgcgcttggcttgccgttgccgcgt
gcagcgttacaggctttaccggatgcgcagtggtcgcagttgctggcgcgaacggcggaa
agctggcagcaactgcccggtatcggtagcgtgttagcacaacggattgtgatgatgctg
caggatgcgcacctgcagcagttgattcactttctgcagcagcaggagattcctgcaact
gattcaatgttcaggatggggatagttgaagatcggcaaaccgaggcggaaacgcagcgc
cagcaagcgggcgaagaagccgaacagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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