KEGG   Pseudomonas aeruginosa PA7: PSPA7_5673
Entry
PSPA7_5673        CDS       T00569                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pap  Pseudomonas aeruginosa PA7
Pathway
pap02024  Quorum sensing
pap03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PSPA7_5673 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PSPA7_5673 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pap03019]
    PSPA7_5673 (hfq)
   03036 Chromosome and associated proteins [BR:pap03036]
    PSPA7_5673 (hfq)
Messenger RNA biogenesis [BR:pap03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PSPA7_5673 (hfq)
Chromosome and associated proteins [BR:pap03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PSPA7_5673 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ABR82556
UniProt: A6VD57
Structure
Position
complement(5837589..5837837)
AA seq 82 aa
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPSGDQPAEPGNA
NT seq 249 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacctcaataccctgcggaaagaacgcgtt
ccggtttccatctatctggtcaacggcatcaagctgcagggccagatcgagtcgttcgac
cagtttgtcatcctgctgaagaacaccgtcagccagatggtttacaaacacgcgatctcc
accgtggtaccgagccgtccggtgcgtctgccgagcggcgaccagccggccgagccgggc
aacgcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
3D Structure (3)   
   PDB (3)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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