KEGG   Paraburkholderia aromaticivorans: CJU94_10325
Entry
CJU94_10325       CDS       T05169                                 
Name
(GenBank) ribonuclease E/G
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
parb  Paraburkholderia aromaticivorans
Pathway
parb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:parb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CJU94_10325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:parb03019]
    CJU94_10325
   03009 Ribosome biogenesis [BR:parb03009]
    CJU94_10325
Enzymes [BR:parb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     CJU94_10325
Messenger RNA biogenesis [BR:parb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CJU94_10325
Ribosome biogenesis [BR:parb03009]
 Prokaryotic type
  rRNA processing factors
   CJU94_10325
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ASV98537
UniProt: A0A248VHL7
Position
1:complement(2243601..2246870)
AA seq 1089 aa
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDT
PHYKLERLRHDDARLDEPRASWKMAEEAARELESETGYSKRTEEAKPKQEAAVKGITPEK
PAPSAPVRPVAAPAPVAVTPASGGFIGWLKNLFGMQPAAPAPAAPATTDKPTRPQRSERT
ERGERTGERGGERNRNRRSGAGGRDAAGRAEGATGSRPAQGQQPSQPRREEREPREAREG
REPREAREPREAREPRGNREPREAREGREPRETREPREPREGREVRENRDRDNRGSDRAE
AVEGAPRAERGERRERGERAERGERRKPQAEAADSLTQGDAQTPEELTQNQAALGENGAP
VDQEAVAREGEERRRRRRGRRGGRREREEDVNGNLAADVAEAEGDNASVTDEAPVRTAHQ
PVEQKTEVDAAKDVTPVEVVVAAVATETAVVTELHAATETPALAVEKAAKSEAVVPVAEA
PAAAAIVEPVVEAPVAPVEAAQAAPAASETVSLVEPVARVVEAPAQVQVEAPAFASPLEA
QAAPAPVETTAPAAVVEAPAAQPAPHAEIAESKPVVTAVEPALVEPPPVAVAPQAPQAAR
HAAVSAEALKPVLEQAGLVWVNTDADKLRAAQEAAAQTVKPARVVRERKSLPPLDSAPMQ
QVETGKHPQ
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgaaacgaatgttgttcaacgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcaaaaactcatcgatatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atttacaagggcatcattacccgcatcgagccgtcgctcgaagcctgcttcgtcaattac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccaatatttccgcgac
ggcgtcgacatgcgctcggcgcgcattcaggacgccctgcgcgaaggccaggaactgatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgcagccctcaccaccttcatctcg
ctcgccggccggtatctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgaccgtcaggaattgcgcgaaaccatggcgcaactgcaattgccg
gaaggcatgagcatcatcgcgcgcacggccggcattggccgcagcgccgaagagctgcag
tgggacctgaactatctgatgcaactgtggcgcgccatcgaagccgcgtcgcaaagcggt
tcgagcggtcagccgatgctgatttatctcgaatcgagcctcgtgatccgcgcgattcgc
gattatttccagccggatatcggcgaaatcctgatcgacaccaccgaaattcatgaccag
gcacgcgccttcatggatatcgtgatgccggacaatgtcagcaaggtgaagcggtatcac
gacgacgtgccgctcttctcgcgcttccagatcgaacaccagatcgaaacggcgtactcg
cgcacggtgccgctgccctcgggcggcgcgatcgtgatcgatcacaccgaagcactggtc
gcgatcgacgtgaactcggcccgcgccaccaagggcgccgacatcgaggaaaccgccgcg
cgcaccaacctcgaagccgccgacgaagtcgcccgccagttgcgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgaa
cagcgcctgaaagacgcgttgaagcacgaccgggcgcgcgtccagatgggcaagatctcg
cgtttcggcttgatggaactgtcgcgtcagcgtctgcgtccggcgctgtccgaaggcagc
cacgtgacctgcccgcgctgtaacggcacgggtcacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgattcat
tgccaggtgccggttgaagtcaccgccttcctgctgaacgaaaagcgcgctgaaatcaac
aagatcgagtcgcgcttcaaggtcaacgtcgtcctgattccgaacaagcatctcgacacg
ccgcattacaagctcgagcgtctgcgtcacgacgacgcgcgcctcgacgaaccgcgcgct
tcgtggaagatggccgaagaagcggcccgcgagctcgaatcggaaaccggttacagcaag
cgcacggaagaagcgaagccgaagcaggaagcggcggtcaagggcatcacgcctgaaaaa
ccggcgccgagcgcaccggttcgtccggttgccgccccggctccggtggcggttacgccg
gccagcggcggtttcatcggctggttgaagaatctgttcggcatgcagccggcggctccg
gcgcctgccgcgccggccacgaccgacaagccgacgcgtccgcaacgcagcgaacgcacg
gagcgcggtgagcgcaccggcgaacgcggtggcgagcgcaaccgcaatcgccgcagcggc
gcaggcggccgcgatgcggcaggccgtgccgaaggcgcgaccggcagccgtccggctcaa
ggccagcaaccgtcgcagccgcgtcgcgaggaacgcgaaccgcgtgaagcacgcgagggc
cgcgagccgcgtgaagcgcgcgagccgcgtgaagcgcgcgaaccgcgtggcaatcgtgaa
ccgcgtgaggcacgcgaaggccgtgagccgcgcgagactcgcgaaccacgcgagccgcgt
gaaggtcgtgaggtccgcgaaaaccgtgaccgtgacaatcgcggcagcgaccgcgcggaa
gccgtcgaaggcgcaccgcgcgccgaacgtggcgagcgccgcgaacgtggcgagcgtgcg
gaacgtggcgagcgccgcaagccgcaagcagaagccgctgactcactgacgcaaggcgac
gcacaaacgccggaagaactgacgcaaaaccaggccgccctgggcgaaaacggtgcgccg
gtcgatcaggaagccgtggcgcgcgaaggcgaagagcgccgccgccgccgtcgcggccgt
cgtggtggccgtcgcgagcgtgaagaagacgtgaacggcaacctggccgcggatgtcgcg
gaagctgaaggcgacaatgccagcgtgaccgacgaagcgccggttcgcacggcacatcag
cctgtcgagcagaaaacggaagtcgacgcggcgaaggacgtgacgccggtggaagtggta
gtcgccgctgtcgcgactgaaaccgcggtggtcaccgaactgcacgctgcaaccgaaacg
ccggctcttgccgtcgaaaaggcggcgaagtcggaagcggtcgtcccggtagcggaagcg
ccggcggctgcggcaatcgtcgagccggttgtcgaagcgccggtggcgccggtcgaagca
gcgcaagccgcgccggccgcgagcgaaacggtttcgctggtcgaaccggttgcacgtgtc
gtcgaagccccggctcaggttcaagtcgaagcgccggcgtttgcgtcgccgctcgaagcg
caagccgcgccggctccggtcgaaaccacggctccggctgcggtagtcgaagctccggcg
gctcagcctgccccgcatgccgagatcgcggaatcgaagccggtcgtgacagcggtcgag
ccggcgctggtcgaacccccgcctgttgccgttgcgccgcaagcgccgcaggcagcgcgt
cacgccgccgtgtcggcggaagccttgaagccggtgctggaacaagccggcctcgtctgg
gtgaacaccgacgccgacaagctgcgcgcagctcaggaagcggccgcgcagaccgtcaag
ccggctcgcgtggtgcgcgaacgcaaatcgttgccgccgctcgacagcgcgccgatgcaa
caagtggaaacgggcaagcacccgcagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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