KEGG   Pseudoalteromonas arctica: PARC_a2566
Entry
PARC_a2566        CDS       T05179                                 
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
part  Pseudoalteromonas arctica
Pathway
part03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:part00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PARC_a2566 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:part03019]
    PARC_a2566 (rhlE)
Messenger RNA biogenesis [BR:part03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PARC_a2566 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 CMS1
Other DBs
NCBI-ProteinID: ATC87042
UniProt: A0A290S4Q3
Position
I:complement(2509252..2510646)
AA seq 464 aa
MSFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI
ERLSSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL
RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ
NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKTALLSHLIRT
NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT
DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYGIER
FIGELIPRAEEDGFEPINPVAERALDARPLPAKKPKKKQPFNKPKSDSSKPNSKKPNNGG
NGTGPRRGGSKKPAAKTDDSTQNPWAKRESVGGNGQRRRRTNND
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgagttttgaaggtttaggtttatcacagtctttggttaatgcggttttagaaaagggc
tatgaaacgccaacgccgattcaggctcaagcaattcctgcaattattgaacgccgtgat
gttatggcagcagcgcaaacaggtacaggtaaaacagcgggttttacattgccacttatt
gagcgtttgtcgtctggccctaaagctaaaagtaaccacgtacgtgcacttattttaacg
cctacgcgtgagcttgctttgcaagtaagcgaaaacgttgaagagtacgctaagcattca
gatgtgagctcatttgtagtttacggtggcgttaaaattaacccacaaatgcagcgtctt
cgtaaaggtgttgatattttagtagcaacgccgggtcgtttaatcgacttacataatcaa
aatgcagttaaatttgatagcgttgaagtgcttgtactcgatgaagctgaccgcatgtta
gacatgggctttattcacgacattaaacgcttaattgctaaaatgcctgctaaacgtcaa
aacttgatgttttcggctacattttctgacgaaattcgtgcattagcaaaagggttaatt
aatgatcctgttgaaatttcagttgctgcaaaaaataccactgcaaaaagtgttactcag
tgtgtttatgcggtagataaaacacgtaaaacagcattgctaagccacttgattcgcact
aacgattggcaacaagtgttagtgtttagccgtacaaagcacggtgctaaccgcttagtt
aaacaactagagcgagatgatattgtaggcgcggctatccatggtaataaatcacaaggc
gcacgtgttaaagcacttgatggttttaaaagtggtgaagtacgcgtactagtagcaaca
gacattgttgcacgtggtttagacattgttgaattaccgcatgttgttaactacgactta
ccaaacgtatatgaagattacgttcaccgtattggccgtacaggccgtgctggtgcatcg
ggtcatgcgatttcgtttgtaacaacagaagatgctgttgatttatacggtattgaacgc
tttattggtgagcttatcccacgtgctgaagaagacggttttgagcctattaacccagta
gctgaacgcgcattagatgctcgcccactgccggctaaaaagcctaagaaaaaacagcct
tttaataagcctaaatctgatagcagcaagcctaacagcaaaaagccaaataatggtggt
aatggtaccggcccacgccgtggtggttctaaaaaaccagcagctaaaacagatgacagc
acacaaaacccatgggcaaagcgtgaatctgttggcggtaatggccaacgccgtcgtcgc
acaaataacgattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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