KEGG   Paraglaciecola sp. T6c: Patl_0568
Entry
Patl_0568         CDS       T00372                                 
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
  KO
K03092  RNA polymerase sigma-54 factor
Organism
pat  Paraglaciecola sp. T6c
Pathway
pat02020  Two-component system
pat02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pat00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Patl_0568
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Patl_0568
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pat03021]
    Patl_0568
Transcription machinery [BR:pat03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Patl_0568
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: ABG39097
UniProt: A0A9J9BAK5
Position
655778..657271
AA seq 497 aa
MKPSLQLKFSQSLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEPTDQESGDS
ALNDNSLDPSSKDTNEIVDTSSDNLDSSEAFEKNEIPEDLPTDTTWDEYISASSAPASSI
SSGAGGDDEQIFQGETTDNIQDHLLWQMRLTHFSDTDVAIATAIIDSIDESGYLTMSAED
VLASMDDEEIELDEVECVLKRIQMFDPIGSGSRTPQECLLVQLRQFAPDTPWLEEAKTLI
GDYADLLASKDYRTLMRKSRLKEDDLREVMRLLKTLNPRPGSALIKGEAEYVIPDVSVSK
KNGRWTVELNPDSLPKLNVNQQYAAMSRSAKNTSDSQFIRSHMQEAKWFIKSVESRNDTL
LKVSNCIVQQQMGFFEHGPEMMKPMVLNDVAEMVDMHESTISRVTTQKYMHTPRGIFELK
YFFSSHVATETGGECSSTAIRALIKKLVAAEKPSKPLSDSKIAQLLADQGIMVARRTIAK
YRESLMIPPSNQRKSLL
NT seq 1494 nt   +upstreamnt  +downstreamnt
atgaaaccctctttacaattaaaatttagtcaatcactcactatgacgccacagttacag
caagctattcgtttgttgcaattgtctacgttagatttacagcaagaaattcaagaagcc
ttggattccaacccgctgttggaagttgaagagcctacggatcaggaatccggcgatagt
gcgttaaatgacaattccctcgacccgtcttctaaagataccaatgaaatagttgatacc
agcagtgacaacttagactcaagtgaagcgttcgagaaaaacgaaatcccagaagactta
cctacggataccacttgggatgagtacatcagcgcttcttccgcacctgcctctagcata
tccagtggtgccggcggtgatgacgaacagatctttcaaggcgaaaccacagataacatt
caagatcatttgctgtggcaaatgcgtttaacccattttagtgataccgatgtcgcgatt
gcgacagcgatcattgattctatcgatgagtctggttatttgaccatgagcgctgaagac
gttctggccagcatggatgatgaagaaatagagctcgatgaagtggaatgcgtacttaag
cgtattcaaatgttcgacccaattgggtcaggctctcgtacaccacaagaatgcttgcta
gtgcaattgcgtcagtttgctcctgatacaccctggttagaagaagcgaagaccttgatt
ggggactatgccgaccttttggcaagcaaggattaccgtactttgatgcgtaaatctcgc
cttaaagaggatgatttgcgtgaggtcatgcgtttacttaaaacgctcaatccgcgtcca
ggcagcgccttgatcaaaggtgaagcagaatacgttatacctgatgtgtcagtgagtaag
aaaaatggccgttggacagtagagcttaacccagacagcctacccaaattgaacgttaat
caacagtatgctgcaatgagtcgtagcgcgaaaaacaccagtgatagtcaatttattcgc
tcacacatgcaagaagccaaatggtttattaaaagtgttgagagccgaaacgatacctta
ttgaaagtgtcaaactgtatagtacagcagcaaatgggcttctttgaacatgggcctgag
atgatgaagcctatggtactaaatgacgtagccgaaatggtggatatgcatgaatctaca
atttctcgtgttactacccaaaaatatatgcatacccctagaggtatatttgagctgaaa
tatttcttctcgagccatgttgcaactgagacaggcggagagtgctcgtcaacggcgata
cgcgcattgattaaaaagctggtcgcagctgaaaaaccaagcaagccgttaagtgacagc
aagattgctcaattgttggccgatcaaggcatcatggtcgctcggcgaacaatagcaaag
taccgggaatctctgatgatacccccgtcgaaccaacgaaaaagcctattgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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