KEGG   Paraglaciecola sp. T6c: Patl_2134
Entry
Patl_2134         CDS       T00372                                 
Name
(GenBank) RNAse E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
pat  Paraglaciecola sp. T6c
Pathway
pat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Patl_2134
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pat03019]
    Patl_2134
   03009 Ribosome biogenesis [BR:pat03009]
    Patl_2134
Enzymes [BR:pat01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Patl_2134
Messenger RNA biogenesis [BR:pat03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Patl_2134
Ribosome biogenesis [BR:pat03009]
 Prokaryotic type
  rRNA processing factors
   Patl_2134
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ABG40652
UniProt: A0A9J9ESP2
Position
2580531..2583743
AA seq 1070 aa
MSFIRGDRYTTESIRMKRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGT
ITRVEPSLEAAFVDYGAERHGFLPLKEIARTYFPQGYKFEGRPNIKDVIKEGQEVIIQID
KEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTDLKQALSNLTLPDGMG
LIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRPAPFLIHQESNVIVRAIRDYLRRD
IGEILIDKTSIYEQAMKHIELVRPDFANRVKLYRGDVPLFSHYQIESQIESAFQREVRLP
SGGSIVIDPTEALTSIDINSARATKGSDIEETAFNTNLEAADEIARQLRLRDLGGLVVID
FIDMTPVRHQREVENRMKDAVRHDRARVQLGRISRFGLLEMSRQRLRPSLGDSAHNVCPR
CSGHGTVRGTESLALSVLRIMEEESIKDNTGQIEAQLPVNVATYLLNEKRGAVAGVEKRH
KVQLVIIPNPNMETPHYNVARRRPDDAIHDMSYNVELMKNEDTEADKAVTATPVKEQPML
QSFVSPAKAAAVQPETPKKADVESVSLLSKIASWLKSLFAPAPQPEPEPEVKPQRKPQQR
RNRNNPRRSKQGDNRSDNRDDNRSSSKDDNRSDNRDGNEKPNNRKPRRNDNRKPRNDNKS
PKELTNTEQKKDQKPAAPQKEVKEHKVAERRKRRDNRRSVRVDDSKEQTAKAKTHTSNAD
IAATNNHNAQAAVEVDSKVAAVIEQTATQDTPATAETQAPVAVSAQDIESPKKSKTKAEE
KRAQESSHETHEDPAKPESMDNTGNDKGENTTQRTRSRRSPRHIRAAGQKRRKDEEAQAT
QVTDNEQSAKQDELQFDAPQAEVAPVQTEQAIKENAVPVTDTVSEVAISADVTQQAPAQG
DLLTQPEDTISKGEEVAEAPEVTAVQSIDEQPVIANDTSVENNAPVDNAKVETAAPKVDA
VAIAPEADEVIVQTIPSAPEKREEKSKPTNKPKAKKAVSKSIQVSASDTKARASHPMATP
ASVEHEFNTLNIGSLSDDARPSVNASGRSAAMVAASTRSGAPATRPASQD
NT seq 3213 nt   +upstreamnt  +downstreamnt
atgtctttcatccgtggcgatcggtacaccaccgagtcaataagaatgaaaagaatgtta
atcaatgcaacgcagcaagaagaattgcgtgttgccctcgtcgatggtcaaaagctttac
gatttagacattgaaagccctggtcacgaacagaaaaaagccaatatatataaaggtaca
ataacccgcgtagagcctagtctagaagcagctttcgtggattacggcgcagagcgtcac
gggttcctacctcttaaagaaatcgcccgcacctattttcctcaaggttataaatttgaa
ggccgtccgaatattaaagacgtcatcaaagaaggccaggaagttattattcaaatcgat
aaagaagagcgaggccagaaaggcgctgcgttaaccacctttatcagtttggcaggtagc
tacctagtattgatgcctaataacccaagagccggtggtatctctcgtcgcatcgaaggt
gatgaacgtacggatcttaaacaagccctaagcaaccttacgttacctgatggaatgggg
ttaattgttcgtaccgctggtgttggtaaatcagctgaagaattacaatgggatttgagt
gttttattaacccattggaccgctatttctgaagcggcggattctcgccctgctcctttc
ctaattcaccaagaaagcaatgttattgtacgcgcaattcgcgactacctgcgtcgtgat
attggcgaaatactgattgataaaaccagtatttacgagcaagccatgaagcacatcgag
ttggttcgccctgatttcgcgaatcgtgtgaagctatatcgtggtgatgtgcctttattc
agccattatcaaattgaaagccaaattgaatctgcttttcagcgtgaagtgcgcttgcca
tcaggtggctcaatcgtaattgacccaaccgaagcccttacctcaattgatattaactct
gcccgcgctaccaaaggcagtgatatcgaagagactgcatttaataccaaccttgaagcc
gctgatgaaattgcccgtcagttacgtttgcgtgatttaggtggtttggtggtcattgac
tttattgacatgacgcctgtacgtcaccaacgtgaagtggaaaaccgcatgaaagacgcg
gtaagacacgaccgtgctcgagtgcaattgggtcgcatttctcgttttggtttacttgaa
atgtcacgtcaacgcttacgcccatcactaggagactctgcccacaatgtgtgccctcgt
tgtagtggtcacggtaccgtgcgtgggactgaatcgttagcattatcagtactgcgtatc
atggaagaggaaagcattaaggacaacacagggcaaatcgaagcccagctacctgttaat
gtggccacttacctgttgaatgaaaaacgcggcgcggttgctggcgttgaaaaacgtcat
aaagtgcaattggtcattattccaaatccgaacatggaaacccctcactacaacgttgct
cgtcgtcgacccgatgatgctattcatgacatgagctataacgttgagttaatgaaaaac
gaagacaccgaagcagataaagccgtaacggccacacctgttaaagaacaacctatgctc
cagagcttcgtctcgcctgctaaggctgcagctgttcaacctgaaacacccaaaaaggct
gatgttgaaagcgtgtcgttgctctcaaaaattgctagttggttgaagtcgttattcgcg
ccagcgccacaacctgagccagagcctgaagttaaacctcagcgtaagccgcaacaacgt
cgcaatagaaacaatcctcgccgcagtaagcaaggtgacaatcgttcagataatcgcgat
gacaaccgctcttcaagcaaggacgacaatcgttcagacaaccgcgatggcaatgaaaag
ccgaataatcgtaagcctcgtcgcaatgataatcgtaaacctcgaaacgataacaagtcg
ccaaaagagctaactaacactgagcagaagaaagatcaaaagccagcagctcctcaaaaa
gaagtaaaagagcacaaggttgctgagcgtcgcaaacgtcgtgataacagacgtagcgtg
cgtgtagatgatagtaaagagcaaacagctaaggctaaaactcacactagcaatgctgat
atcgctgcaaccaacaatcataacgctcaagctgctgttgaagtagacagcaaagttgcc
gcagtcattgagcaaaccgctacacaggacactcctgctaccgcggaaactcaggctcct
gttgcagtatctgcacaagatattgaatcaccgaaaaagtctaagacgaaggcggaagag
aagcgcgctcaagagtcttctcacgagacccatgaagacccagctaaaccagagtcaatg
gataacaccggtaacgataaaggtgaaaacacgactcagcgtacacgcagtcgtcgttca
cctcgtcacattcgtgctgcaggtcaaaagcgtcgtaaagatgaggaagctcaagcaaca
caggtgaccgataacgagcaaagcgctaagcaggatgagttacaatttgatgcaccacag
gctgaagtagcgccagtgcaaactgaacaagccatcaaagaaaatgctgtacctgtaacg
gatacagtttctgaggttgctatcagtgctgatgtgactcaacaagcaccggctcaaggc
gacttgttaactcaaccagaagacactatttccaaaggtgaagaagtcgctgaagcgcct
gaggtcacggcagttcaatctattgatgagcaacctgtcatcgcaaacgatactagcgtg
gaaaataacgcacctgtcgacaacgcaaaggttgaaactgcagcacctaaagtagacgcg
gttgcaatcgcccctgaagcagatgaagtcattgtgcaaacgataccgtcagctccagaa
aagcgtgaagagaaatctaaacctacgaataagccaaaagcgaaaaaagcggtgtcaaaa
tcaattcaggttagcgctagcgatactaaggctcgtgcttcacacccaatggctacgcca
gccagtgttgagcatgagttcaacacgttaaacattggttcgctaagtgatgatgcacga
ccgtctgtaaatgcttctggaagatcagctgctatggtggctgcatcaactcgttccggg
gcaccggctacgagacccgcatcacaagactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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