KEGG   Paraglaciecola sp. T6c: Patl_3785
Entry
Patl_3785         CDS       T00372                                 
Name
(GenBank) RNAse R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pat  Paraglaciecola sp. T6c
Pathway
pat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Patl_3785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pat03019]
    Patl_3785
   03016 Transfer RNA biogenesis [BR:pat03016]
    Patl_3785
Enzymes [BR:pat01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Patl_3785
Messenger RNA biogenesis [BR:pat03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Patl_3785
Transfer RNA biogenesis [BR:pat03016]
 Prokaryotic type
  tRNA degradation factors
   Patl_3785
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 Rho_RNA_bind RNase_II_C_S1 CSD
Other DBs
NCBI-ProteinID: ABG42285
UniProt: A0A9J9ERV4
Position
4559193..4561439
AA seq 748 aa
MNQTAQLSTIRTYANPIPGREFILSLFSSLKKHLNREQIADALALNSPQEKEALRRRLRA
MERDGQLSFQRKGYQLIDPDSLVSGPISIHPEGFGFVTYSDVERDLFLPKSQLNHVFDGD
VVQVLVEPGKNAKRAYSNLIKVQKRNTTHVVGMLQRKGKHYFLLPDDVKVSHTIHVEHSA
LNQARVGQYVSGKITHYPDFRQETHVEITEVLGNATDAGIESTLALYRHGISDQWDKTLL
DKANTHGTRVSQADKAQRTDYRSLPFVTIDGADAKDFDDAVYCEKTQAGNWRLLVAIADV
SHYVLPNDALDIEAQARATSIYLPDQVVPMLPEALSNGLCSLNPHEDRLVMMCEMTINAT
GLVTQAAFSEGVIQSHARLTYNQANALVTQPNSKLGKTTAASSPAIVPHVKDLHALFQVL
IKQRKQRGAIDFETRELALKLNKHKNIASISPVKRNDAHRMIEEFMLCANVATAQFLQRH
KIPSLFRVHLGPQQKKLTALRAFLTEKGLTLGGGDSPSPQHYNDLLKKVNHRADAKLIQM
LLLRSQSQAEYSPENQGHFGLAYEAYAHFTSPIRRYPDLLTHRAIRATLRSNKSANNASK
SESGFKRLLRQLKLGVSIGKAVPNNASPYTAEEVALLSHHCSGQSRLADTVSREVESALM
CKYMQPFIGDTFGASISGMNNAGLFVTLENTGAEGLVSMMSLPGETYTFDAQKQQVTNGQ
NTHRIGDHLTVVLKSVDIRARKMSFELA
NT seq 2247 nt   +upstreamnt  +downstreamnt
ttgaatcaaaccgcacaattatccactatccgtacgtatgccaaccccatccctggccgt
gagttcattcttagtctttttagtagcctaaaaaaacacttaaatcgcgagcaaatagca
gatgctttagctctcaattcccctcaagaaaaagaagcgcttagaagacgtttgcgcgca
atggagcgtgacgggcaactatcatttcaacgcaagggttatcaattaattgatcctgat
tcgctggttagcggccctatcagtattcaccctgagggttttggttttgttacctatagc
gatgtcgaaagagacttgtttctgccaaagagccaactgaaccatgtatttgatggtgat
gtggtacaagtgctagtagagcctgggaaaaacgcaaaacgtgcctacagtaacctgatt
aaagtacaaaagcgcaataccacccacgttgtgggtatgttgcaacgcaaaggtaagcat
tactttttactgcccgatgacgttaaagtttcacacacaattcatgttgagcacagcgcc
ttaaaccaagcgcgcgtcggccaatatgtgagtggcaaaattacccactaccctgacttt
cgccaagaaacacacgttgaaattactgaagtattaggcaatgcaaccgatgctggcata
gaaagcacattggcgctttatcgccacggtatttctgaccagtgggataaaacattgctc
gacaaggcaaatacacatggcacgcgagtatcacaagcggacaaagcacagcgcacagat
tatcgcagtttgccgtttgtcactatcgatggggctgatgcgaaggactttgatgacgcc
gtttattgtgagaaaactcaagcaggaaattggcgtttattggtagcaatagctgatgtg
tcgcattatgtattacccaatgacgcattggatattgaagcgcaagcgcgcgccacatcg
atttatctgccagatcaagttgtcccaatgctacccgaggcattgtctaacggcttgtgc
tcgttgaatccgcatgaagaccgcttggtgatgatgtgtgagatgactatcaacgcaaca
gggctcgttactcaagcagcttttagcgaaggcgtgattcaatctcatgcacgactaacc
tacaatcaagcgaatgcgctcgtcactcagccaaacagtaagcttggcaaaaccaccgcc
gcttctagcccagccatcgttccccatgttaaggatttacatgctctttttcaggtgcta
attaagcagcgtaagcaacgcggtgcgattgattttgaaacgcgagaacttgcactcaag
ctgaacaaacacaaaaatattgcgagtatttctcccgtaaagcgaaatgacgctcaccgc
atgattgaagaatttatgttatgcgcgaatgtcgctacggcacaatttttacaacgtcat
aaaattcctagtttatttagagtgcacttaggtccacagcaaaagaaactcacggcatta
cgtgcatttttgactgagaaaggcttaacccttggcggcggagatagtccaagcccgcaa
cattacaatgacttgttgaaaaaagtgaaccacagggctgatgcaaaacttattcaaatg
ttgttactacgctcgcaaagccaggcggaatactcccccgagaatcaagggcactttggt
ttagcctatgaggcgtatgcacatttcacctcgcccataagacgctacccagatttgtta
acccatcgcgcgataagagcaacgctacgaagcaataaatccgctaataacgccagcaag
tctgaatccggtttcaaacggttattgcgtcaattaaagctcggcgtatcaatcggtaag
gctgtgccgaataatgcatccccctacacggctgaagaggtagcgcttttaagtcaccat
tgttctgggcaatcgcgtttagctgatacggttagccgagaagtcgaaagtgcacttatg
tgtaaatacatgcaaccttttatcggtgacacttttggtgcctctatatcaggaatgaat
aatgctggtttgtttgtgacgcttgaaaatacaggagcagaaggtttagtcagtatgatg
agtctaccaggcgagacatatacgtttgatgcccaaaaacagcaagtcaccaacggacag
aacactcaccgcataggcgatcatttaacggtcgtgttaaaaagtgttgatatacgcgct
cgaaaaatgagctttgaactggcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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