KEGG   PATHWAY: aau03430
Entry
aau03430                    Pathway                                
Name
Mismatch repair - Paenarthrobacter aurescens
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
aau03430  Mismatch repair
aau03430

Other DBs
GO: 0006298
Organism
Paenarthrobacter aurescens [GN:aau]
Gene
AAur_1041  pcrA; ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
AAur_2736  putative ATP-dependent DNA helicase (UvrD/REP) [KO:K03657] [EC:5.6.2.4]
AAur_2739  UvrD/REP helicase [KO:K03657] [EC:5.6.2.4]
AAur_2810  xseA; exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
AAur_2812  xseB; exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
AAur_4164  ssb; single-strand binding protein [KO:K03111]
AAur_2400  putative single-strand binding protein (SSB) (Helix-destabilizing protein) [KO:K03111]
AAur_pTC20073  ssb; single-strand binding protein [KO:K03111]
AAur_1721  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
AAur_0002  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
AAur_0666  dnaX; DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
AAur_2242  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
AAur_0887  putative DNA polymerase III, delta' subunit [KO:K02341] [EC:2.7.7.7]
AAur_2742  putative DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
AAur_2564  putative DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
AAur_1434  ligA; DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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