KEGG   PATHWAY: acm00020
Entry
acm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Granulicella tundricola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acm00020  Citrate cycle (TCA cycle)
acm00020

Module
acm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acm00020]
acm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acm00020]
Other DBs
GO: 0006099
Organism
Granulicella tundricola [GN:acm]
Gene
AciX9_1025  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
AciX9_3460  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AciX9_2985  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
AciX9_2785  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
AciX9_0020  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AciX9_3227  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AciX9_3229  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AciX9_1388  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AciX9_1386  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AciX9_1389  hypothetical protein [KO:K00241]
AciX9_3031  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
AciX9_3130  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AciX9_1376  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
AciX9_3119  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AciX9_2691  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
AciX9_1349  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
AciX9_0024  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acm00010  Glycolysis / Gluconeogenesis
acm00053  Ascorbate and aldarate metabolism
acm00061  Fatty acid biosynthesis
acm00071  Fatty acid degradation
acm00190  Oxidative phosphorylation
acm00220  Arginine biosynthesis
acm00250  Alanine, aspartate and glutamate metabolism
acm00280  Valine, leucine and isoleucine degradation
acm00350  Tyrosine metabolism
acm00470  D-Amino acid metabolism
acm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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