KEGG   PATHWAY: aly03430
Entry
aly03430                    Pathway                                
Name
Mismatch repair - Arabidopsis lyrata (lyrate rockcress)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
aly03430  Mismatch repair
aly03430

Other DBs
GO: 0006298
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Gene
9324369  uncharacterized protein LOC9324369 isoform X1 [KO:K07456]
9321330  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
9310982  DNA mismatch repair protein PMS1 isoform X1 [KO:K10858]
9308502  DNA mismatch repair protein MLH1 isoform X1 [KO:K08734]
9319590  DNA mismatch repair protein MSH7 [KO:K08737]
9308928  DNA mismatch repair protein MSH6 [KO:K08737]
9319206  DNA mismatch repair protein MSH2 [KO:K08735]
9305740  DNA mismatch repair protein MSH3 [KO:K08736]
9303143  DNA mismatch repair protein MLH3 isoform X1 [KO:K08739]
9308053  replication factor C subunit 1 [KO:K10754]
9326515  replication factor C subunit 4 [KO:K10755]
9324037  replication factor C subunit 2 [KO:K10755]
9323750  replication factor C subunit 5 [KO:K10756]
9308329  replication factor C subunit 3 [KO:K10756]
9315286  proliferating cell nuclear antigen 2 [KO:K04802]
110229071  proliferating cell nuclear antigen 2-like [KO:K04802]
9328459  proliferating cellular nuclear antigen 1 [KO:K04802]
9326885  exonuclease 1 [KO:K10746] [EC:3.1.-.-]
9326322  exonuclease 1 [KO:K10746] [EC:3.1.-.-]
9327004  LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit C [KO:K07466]
9306071  replication protein A 70 kDa DNA-binding subunit E [KO:K07466]
9319805  replication protein A 70 kDa DNA-binding subunit A isoform X1 [KO:K07466]
9300791  replication protein A 70 kDa DNA-binding subunit D [KO:K07466]
9307372  replication protein A 70 kDa DNA-binding subunit B [KO:K07466]
9318328  replication protein A 32 kDa subunit B [KO:K10739]
9314828  replication protein A 32 kDa subunit A [KO:K10739]
9312229  replication protein A 14 kDa subunit A [KO:K10740]
9306107  replication protein A 14 kDa subunit B [KO:K10740]
9302657  DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
9317888  DNA polymerase delta small subunit isoform X1 [KO:K02328]
9325268  DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
9325836  DNA polymerase delta subunit 4 [KO:K03505]
9328500  DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

DBGET integrated database retrieval system