KEGG   PATHWAY: amd03430
Entry
amd03430                    Pathway                                
Name
Mismatch repair - Amycolatopsis mediterranei U32
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
amd03430  Mismatch repair
amd03430

Other DBs
GO: 0006298
Organism
Amycolatopsis mediterranei U32 [GN:amd]
Gene
AMED_1134  ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
AMED_1233  ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
AMED_0798  uvrD; DNA helicase II/ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
AMED_8056  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
AMED_8058  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
AMED_9297  ssb; single-strand DNA-binding protein [KO:K03111]
AMED_0360  ssb; single-strand DNA-binding protein [KO:K03111]
AMED_3023  ssb; single-strand DNA-binding protein [KO:K03111]
AMED_6159  ssb; single-strand DNA-binding protein [KO:K03111]
AMED_2153  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
AMED_0002  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
AMED_8835  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
AMED_8918  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
AMED_6686  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
AMED_8787  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
AMED_0172  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AMED_2206  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AMED_3171  ligA; DNA ligase (NAD+) [KO:K01972] [EC:6.5.1.2]
AMED_1669  ligA; DNA ligase (NAD+) [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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