KEGG   PATHWAY: bfr00020
Entry
bfr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides fragilis YCH46
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bfr00020  Citrate cycle (TCA cycle)
bfr00020

Module
bfr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bfr00020]
bfr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bfr00020]
bfr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bfr00020]
bfr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bfr00020]
bfr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bfr00020]
Other DBs
GO: 0006099
Organism
Bacteroides fragilis YCH46 [GN:bfr]
Gene
BF3753  citrate synthase [KO:K01647] [EC:2.3.3.1]
BF3755  aconitase protein [KO:K01681] [EC:4.2.1.3]
BF3754  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BF1621  lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BF1618  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BF0024  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BF1648  ketoisovalerate oxidoreductase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BF4440  2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BF4441  2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BF1646  ketoisovalerate oxidoreductase subunit VorA [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BF1645  ketoisovalerate oxidoreductase subunit VorA [KO:K00177] [EC:1.2.7.3]
BF1649  conserved hypothetical protein [KO:K00176] [EC:1.2.7.3]
BF2256  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
BF2257  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
BF4552  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BF4553  fumarate reductase iron-sulfur cluster protein subunit [KO:K00240] [EC:1.3.5.1]
BF4551  fumarate reductase cytochrome b subunit [KO:K00241]
BF0676  anaerobic fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
BF3978  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BF0541  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BF2937  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
BF1892  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
BF4446  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BF3332  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bfr00010  Glycolysis / Gluconeogenesis
bfr00053  Ascorbate and aldarate metabolism
bfr00061  Fatty acid biosynthesis
bfr00071  Fatty acid degradation
bfr00190  Oxidative phosphorylation
bfr00220  Arginine biosynthesis
bfr00250  Alanine, aspartate and glutamate metabolism
bfr00280  Valine, leucine and isoleucine degradation
bfr00350  Tyrosine metabolism
bfr00470  D-Amino acid metabolism
bfr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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