KEGG   PATHWAY: btg03030
Entry
btg03030                    Pathway                                
Name
DNA replication - Bacillus thuringiensis Bt407
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
btg03030  DNA replication
btg03030

Organism
Bacillus thuringiensis Bt407 [GN:btg]
Gene
BTB_502p05460  polC; DNA polymerase III polC-type [KO:K02342] [EC:2.7.7.7]
BTB_c36910  polC1; DNA polymerase III polC-type [KO:K02342] [EC:2.7.7.7]
BTB_c47560  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
BTB_502p06290  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
BTB_c39430  polC2; DNA polymerase III polC-type [KO:K03763] [EC:2.7.7.7]
BTB_c00240  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
BTB_c00370  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
BTB_c44650  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
BTB_c00020  dnaN1; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
BTB_c28000  dnaN2; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
BTB_c10000  dnaC1; replicative DNA helicase DnaC [KO:K02314] [EC:5.6.2.3]
BTB_c39130  dnaC2; replicative DNA helicase DnaC [KO:K02314] [EC:5.6.2.3]
BTB_c56700  dnaC3; replicative DNA helicase DnaC [KO:K02314] [EC:5.6.2.3]
BTB_c44360  dnaG; DNA primase DnaG [KO:K02316] [EC:2.7.7.101]
BTB_502p00110  DNA primase [KO:K02316] [EC:2.7.7.101]
BTB_c22150  ssb3; single-stranded DNA-binding protein 3 [KO:K03111]
BTB_c56750  ssb; single-stranded DNA-binding protein Ssb [KO:K03111]
BTB_502p00100  single-stranded DNA-binding protein [KO:K03111]
BTB_c16360  rnhA; 14.7 kDa ribonuclease H-like protein RnhA [KO:K03469] [EC:3.1.26.4]
BTB_c16390  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
BTB_c39630  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
BTB_c47070  rnhC; ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
BTB_c47380  polA2; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
BTB_c03560  ligA; DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
BTB_502p01460  ligA; DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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