KEGG   PATHWAY: csy03030
Entry
csy03030                    Pathway                                
Name
DNA replication - Cenarchaeum symbiosum
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
csy03030  DNA replication
csy03030

Organism
Cenarchaeum symbiosum [GN:csy]
Gene
CENSYa_0163  bacterial-type DNA primase [KO:K02316] [EC:2.7.7.101]
CENSYa_0146  bacterial-type DNA primase [KO:K02316] [EC:2.7.7.101]
CENSYa_0148  bacterial-type DNA primase [KO:K02316] [EC:2.7.7.101]
CENSYa_0129  bacterial-type DNA primase [KO:K02316] [EC:2.7.7.101]
CENSYa_0020  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
CENSYa_0559  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
CENSYa_1180  DNA polymerase elongation subunit (family B) [KO:K02319] [EC:2.7.7.7]
CENSYa_1840  archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [KO:K02323] [EC:2.7.7.7]
CENSYa_1827  archaeal DNA polymerase II, large subunit [KO:K02322] [EC:2.7.7.7]
CENSYa_1723  Cdc46/Mcm DNA replication licensing factor ATPase [KO:K10726] [EC:5.6.2.3]
CENSYa_1927  eukaryotic-type DNA primase, catalytic (small) subunit [KO:K02683] [EC:2.7.7.102]
CENSYa_1926  eukaryotic-type DNA primase, large subunit [KO:K18882]
CENSYa_1422  DNA polymerase sliding clamp subunit (PCNA) [KO:K04802]
CENSYa_1725  replication factor C small subunit [KO:K04801]
CENSYa_1654  replication factor C/ATPase involved in DNA replication [KO:K04800]
CENSYa_0270  5'-3' exonuclease [KO:K04799] [EC:3.1.-.-]
CENSYa_1021  ATP-dependent DNA ligase [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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