KEGG   PATHWAY: cya00020
Entry
cya00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Synechococcus sp. JA-3-3Ab
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cya00020  Citrate cycle (TCA cycle)
cya00020

Module
cya_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cya00020]
cya_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cya00020]
Other DBs
GO: 0006099
Organism
Synechococcus sp. JA-3-3Ab [GN:cya]
Gene
CYA_1739  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
CYA_1444  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CYA_1467  isopropylmalate/isohomocitrate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
CYA_2059  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CYA_0688  succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CYA_2142  putative aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CYA_0519  dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
CYA_2326  putative dehydrogenase, E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
CYA_0742  putative 2-oxo acid dehydrogenase, acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cya00010  Glycolysis / Gluconeogenesis
cya00061  Fatty acid biosynthesis
cya00071  Fatty acid degradation
cya00190  Oxidative phosphorylation
cya00220  Arginine biosynthesis
cya00250  Alanine, aspartate and glutamate metabolism
cya00280  Valine, leucine and isoleucine degradation
cya00350  Tyrosine metabolism
cya00470  D-Amino acid metabolism
cya00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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